ID AB254451; SV 1; linear; genomic RNA; STD; VRL; 4505 BP. XX AC AB254451; XX DT 14-APR-2007 (Rel. 91, Created) DT 30-JUN-2007 (Rel. 92, Last updated, Version 2) XX DE Rice gall dwarf virus genomic RNA, segment S1, complete sequence. XX KW . XX OS Rice gall dwarf virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Phytoreovirus. XX RN [1] RP 1-4505 RA Omura T., Hagiwara K.; RT ; RL Submitted (26-MAR-2006) to the INSDC. RL Toshihiro Omura, National Agricultural Research Center, Laboratory of RL Virology; Kannondai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan RL (E-mail:toomura@affrc.go.jp, Tel:81-29-838-8932, Fax:81-29-838-8929) XX RN [2] RX DOI; 10.1007/s00705-007-0948-7. RX PUBMED; 17426918. RA Moriyasu Y., Maruyama-Funatsuki W., Kikuchi A., Ichimi K., Zhong B., RA Yan J., Zhu Y., Suga H., Watanabe Y., Ichiki-Uehara T., Shimizu T., RA Hagiwara K., Kamiunten H., Akutsu K., Omura T.; RT "Molecular analysis of the genome segments S1, S4, S6, S7 and S12 of a Rice RT gall dwarf virus isolate from Thailand; completion of the genomic RT sequence"; RL Arch. Virol. 152(7):1315-1322(2007). XX DR MD5; 0bd396792c7f8c8757a14be705c2f534. XX FH Key Location/Qualifiers FH FT source 1..4505 FT /organism="Rice gall dwarf virus" FT /segment="S1" FT /mol_type="genomic RNA" FT /db_xref="taxon:10986" FT CDS 42..4418 FT /codon_start=1 FT /transl_table=1 FT /gene="RGDVP1" FT /product="putative RNA dependent RNA polymerase" FT /db_xref="GOA:A4PBP6" FT /db_xref="InterPro:IPR007097" FT /db_xref="UniProtKB/Swiss-Prot:A4PBP6" FT /protein_id="BAF49639.1" FT /translation="MSGADVESYIFPRIREILTGGISGIREAYINELRVCEKLIQWRNG FT SDNQVDSTNDASVKGMVFHRVSERNELQNRYAGLYDDLFKLNNNNVDIDVITKHDETID FT KIISKELKSKMWYELNDEDIHSSLLPEFQIQTLDDYYDNMKKYLSQDDRDEKGNDNREE FT EDVKNRNDNVTRIQWQTLMEKDRKVKLHDDLSFSNEVETSLSTYINLRTKEEMDPRYVY FT HPVPALFITLTLLKVLTGGKAFSYGVRYLEKLCKTISKGERSLATYPAIFGSNGELVAT FT RLYSHYAIKMRLILNNMTYLLTYKSCHEFKDFYIDVNDEVLLYMLENPNGGRDLKKAVT FT RLNLYYGLRYNPKTTDSLKIIDGVDYHHEHPKYSDRSYDAPIIEPENHFSASEQCYEHN FT AKLLNQAVYSKTVKEYIDSDIKKVKDLNLPLLTKFTEKLVDMRCNKSIIYDIVFMRTLL FT NMGGYSRSNQITDFKGTIDDITKMNDEYLSDVSEGGKRAKMSEWMYPKMEACGYGLTKS FT ILNGQMVGVSYPSASESKAHIESYITPNSAGIGNLRFDVDVGGKMYKVRTTSKSAFVNA FT LGTNIFNIDTISMEPMFLSEYLTHLNQDEKMLLYDRRKNRQIQDIELMRLCGQNVIGSR FT STTAWRPVRPIYINVIQAHLAQAFIIGPHINATVGRQRTPPKGLWFTGEDVGIGFATIY FT QNGTSDVISHAIEASASGRCLSVLADCSSWDQTFLTESIIPYYQGIKRAISEFGQADSE FT NYYMYDNQRKDVVGMRLTETIDWFNEYQKKRIFNASYLGERYSFKVQYMWSGRLDTFFM FT NSVQNALITERIANQVSSSVAGSPSLVWFQVAGDDAIMVYNANSITSSDQVDAIRKTVV FT DEYTADNHIINPQKTVISHISGEYAKIYYYAGMHFRDPSIQLHESEKISKATNITEVMR FT GYAQVAFEYNKRAIGSLRINSLYARLLASLAYSINVKRSDDESIENKPNRRGSKAKARS FT TKTNNLRSFSSVKYYPPLTSVITPTGVKGGLGMSLSGISLNEILMIKELLLDLVEAGLK FT IVDQVSFEQNEIVSKSLMRHFLRDRKDLIKEMGLDKGTKPVMAVRYRSSDSAFSSGNFE FT NGISMRLESLDSHKLSIARQSEAKLKSVGVNLPKMYTYENLPYSTINQSLKGITIDKDL FT SRMTNSDLVDQLRSIPESECKGNLISKYPVYGLFNARRIISMDEKVDNPIRYISTPDEG FT KALERLIGSRTGIQFKNQGYGGSPAIVRFIRRNGLTITEENLIDLVISSGAISLANPKQ FT NMIELFQAISGDQQSSLELANFFMNEKPHWEDKAISITINGSILENCDSRISNISRFVS FT IDAIRIPGDIKKMFTYIAYVYMCQMFILDENTPSKIHISINEEQLRDFLISAKPISKNR FT MKQTIDMKFSNQNSGVTIEIDEESLSRTADLDYEVLKLVHPLSVPFLRNLSEGSPM" XX SQ Sequence 4505 BP; 1549 A; 747 C; 957 G; 1252 T; 0 other; ggcatttttt gagccaagcc accgaagcat acgtgtctgc catgagtggc gcagatgtcg 60 agtcatacat atttccgcgt atccgggaga ttctgactgg tggaatttct ggaattcgag 120 aagcatacat taatgagttg agagtctgtg aaaaactcat tcaatggaga aatggatcag 180 acaatcaagt tgacagtaca aatgatgcat ctgtgaaagg tatggtattt cacagagtat 240 ctgagaggaa tgaattgcag aatagatacg ccggattata cgacgatctt ttcaaattga 300 ataacaataa tgttgatatc gacgtgatca ctaaacatga tgagacgatt gataaaataa 360 tctcaaaaga gttgaaatct aaaatgtggt acgagttgaa cgatgaagac attcattcat 420 cgttgttgcc tgaatttcag attcagactt tagatgatta ttatgataat atgaaaaaat 480 atctttctca agatgatcgt gatgagaaag gaaatgacaa cagagaagaa gaagacgtta 540 aaaatagaaa tgataacgta acacgaatac aatggcaaac gcttatggag aaagacagaa 600 aagtcaagct ccatgatgat ttatcattct caaatgaagt agaaactagt ctatctactt 660 atattaactt acgaactaag gaagagatgg atccaaggta tgtatatcat ccagttcctg 720 ctttatttat aactcttaca ttactgaaag tacttacggg agggaaagca ttttcgtatg 780 gcgtacgcta tcttgagaag ctttgtaaaa caatatctaa aggggaacgc agcctagcta 840 cataccctgc gatcttcggg tctaatggtg aattagtagc gactagatta tactctcatt 900 acgccataaa aatgaggctt atcctgaaca acatgacata tttattgact tataaatcat 960 gtcatgagtt taaggatttt tatattgatg taaacgatga agtcttgtta tacatgcttg 1020 aaaaccctaa tggtggaagg gatttgaaga aagcagtgac tagacttaat ctatactacg 1080 ggttacggta taatccaaaa actactgatt cattaaaaat cattgatgga gttgattatc 1140 atcacgagca tccgaagtac tcggatagga gttatgatgc cccaattatt gaacctgaaa 1200 atcatttctc tgcctccgag cagtgttatg agcataacgc taagttattg aaccaagccg 1260 tatattcgaa aaccgtcaaa gaatatattg acagcgacat taagaaagtt aaagacctaa 1320 acctgccatt attaactaag tttacagaaa aattggtaga tatgcggtgt aacaagtcaa 1380 taatttacga cattgtattc atgcgaactc tacttaatat gggaggctac tcaaggtcaa 1440 atcaaattac tgactttaag ggtaccatag atgacattac aaaaatgaat gatgaatacc 1500 tttccgacgt tagtgaagga ggaaagagag ctaagatgtc tgaatggatg tatccaaaga 1560 tggaagcatg tggatatgga ttgaccaagt ccattttgaa tggtcaaatg gtgggagttt 1620 cgtatccatc agctagcgaa tccaaggcgc acatagaatc gtatattaca ccaaactcag 1680 ctgggatagg taatctacga tttgatgtgg acgtcggtgg gaaaatgtat aaagttagaa 1740 ccacgtcaaa atctgcattt gtcaatgctt tgggaacaaa catttttaat atagacacta 1800 tcagtatgga gccgatgttc ctgtctgagt atttgactca tttaaatcaa gatgagaaaa 1860 tgctgttata tgatagacgt aaaaatagac aaatacaaga cattgagttg atgaggctat 1920 gtggacaaaa tgttatcggt tcacgctcaa ctactgcttg gaggcccgtt aggccaatat 1980 acattaatgt cattcaggcc cacttagccc aagctttcat aattggtcct cacataaatg 2040 caacggtcgg tcgccaacgt accccaccta agggtctgtg gtttactggc gaggatgttg 2100 ggattggatt tgctaccata taccaaaatg gaacttcaga cgtgatttcc catgctatag 2160 aagcatctgc gtcgggtaga tgtctctcgg tgttagccga ttgctcgtcg tgggatcaga 2220 catttttgac ggagtcaata ataccatact accaaggcat aaaacgtgca atcagtgagt 2280 ttggtcaagc tgatagcgaa aattattata tgtatgataa tcaaagaaaa gatgtggtag 2340 gtatgcgttt aaccgagacg attgattggt tcaatgagta ccagaaaaaa cggatcttta 2400 acgcatctta tctgggagaa agatattcat ttaaagtaca atatatgtgg tcgggaagac 2460 tagatacttt cttcatgaac tcagtacaga acgcattaat tactgaaagg atagctaatc 2520 aagtaagttc aagtgtagcc ggatctccta gtctagtttg gtttcaagta gctggagacg 2580 acgctataat ggtatataat gccaactcta taacatcatc ggatcaagtt gatgcaatca 2640 ggaaaaccgt ggttgatgaa tatacggccg acaatcacat tattaatcca caaaagaccg 2700 ttatctccca catctcagga gaatatgcta agatatatta ctatgcaggt atgcatttca 2760 gggatccatc aatccagctg cacgagtcag agaaaatatc aaaagccact aacataaccg 2820 aggtaatgag aggttacgct caagtagctt ttgaatataa taaaagggcc attgggagct 2880 tacgtataaa ttcactatat gcacgtttat tggcatcatt agcatattca ataaatgtca 2940 aacgtagtga tgatgaatca attgagaata aaccaaatag gaggggttct aaagctaagg 3000 caagaagcac caagacgaac aatctccgat cattttcgtc cgtgaaatat tatccacctc 3060 taacatcagt gattactcca accggtgtta agggaggttt gggaatgagc ttaagtggaa 3120 tatctttaaa tgagatattg atgatcaagg aactattatt ggatctggtt gaggctgggt 3180 taaagatagt agatcaggta tcgtttgagc aaaatgagat tgtgtcgaaa tctttgatgc 3240 gacattttct ccgtgacaga aaggacttaa ttaaggaaat gggattggat aagggaacta 3300 aacccgtgat ggcagtgcgg tatagatcct cagattcagc tttctcctca ggaaattttg 3360 aaaatggaat ttcaatgaga ttagaaagct tagattcgca caaactgagt atagctaggc 3420 agtcagaagc aaagctgaaa tcagttggcg taaacctacc aaaaatgtac acatatgaga 3480 atctgccata ttccaccata aatcaatccc ttaaagggat aactatagac aaagatctaa 3540 gtcgcatgac aaactctgat ctagttgatc aattacgaag tataccggaa tctgaatgta 3600 aaggtaattt gatttcaaaa tatccagtct atggattgtt taacgcaagg cggatcatct 3660 ccatggatga gaaggtggat aatccaatta gatacatatc gaccccagat gagggaaagg 3720 cgttagagcg acttataggg tcaagaacag gaatacaatt caagaatcaa ggatatggag 3780 gatctccagc tattgttaga ttcataagga gaaatgggtt aacaataact gaagagaatc 3840 tgattgactt agtaatttca tcaggagcaa tatccttagc gaatccgaaa cagaatatga 3900 ttgaattatt ccaagccata tcaggtgatc agcagtcatc actcgaactt gcgaacttct 3960 tcatgaatga aaaaccgcat tgggaagata aagccatatc gattactatc aatgggtcaa 4020 tattggaaaa ctgtgactcc agaatttcta atatatctag attcgtaagt atagatgcaa 4080 ttagaattcc aggtgatatt aaaaagatgt tcacatatat tgcatatgta tacatgtgtc 4140 aaatgttcat tttggatgaa aatactccta gcaagataca tatatcaatc aatgaagaac 4200 agttgcgtga cttcctaatc tcagcgaagc cgatatcaaa gaataggatg aagcagacaa 4260 ttgatatgaa atttagtaat cagaacagtg gtgttacaat agagatcgat gaagagtctt 4320 tatccagaac agctgattta gattacgaag tattgaaatt agtgcatcca ctctcggtgc 4380 cattcttgag aaatttatcg gaagggtctc ctatgtgagg agcgacgtta tgtattgacg 4440 aaccattctg taggaaggct aggtaactcg gttgggagtt atcgaaactg gctcaaaata 4500 ttgat 4505 //