ID AB250686; SV 1; linear; genomic RNA; STD; VRL; 4271 BP. XX AC AB250686; XX DT 17-FEB-2007 (Rel. 90, Created) DT 31-JUL-2009 (Rel. 101, Last updated, Version 3) XX DE Melon necrotic spot virus genomic RNA, complete genome, strain: Nagasaki. XX KW . XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4271 RA Tsuda S.; RT ; RL Submitted (16-FEB-2006) to the INSDC. RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan XX RN [2] RX DOI; 10.1094/PHYTO-98-2-0181. RX PUBMED; 18943194. RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J., RA Knight L.M., Tsuda S.; RT "High temperatures activate local viral multiplication and cell-to-cell RT movement of Melon necrotic spot virus but restrict expression of systemic RT symptoms"; RL Phytopathology 98(2):181-186(2008). XX DR MD5; 9bdf54a589bba69155ec663518be4914. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC5954562; 29868081. XX FH Key Location/Qualifiers FH FT source 1..4271 FT /organism="Melon necrotic spot virus" FT /strain="Nagasaki" FT /mol_type="genomic RNA" FT /country="Japan:Nagasaki" FT /isolation_source="Melon" FT /db_xref="taxon:11987" FT CDS 90..2465 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:894..896,aa:OTHER) FT /gene="p88" FT /product="p88k-polymerase" FT /note="readthrough product" FT /db_xref="GOA:A2V6E2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A2V6E2" FT /protein_id="BAF47094.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRAPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGKFLDFYTGRRRTIYEGAVKSL FT EGLSVQRKDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGVNHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL" FT CDS 90..896 FT /codon_start=1 FT /transl_table=1 FT /gene="p28" FT /product="p28k-polymerase" FT /db_xref="UniProtKB/TrEMBL:A2V6E3" FT /protein_id="BAF47095.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRAPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN" FT CDS 2444..2641 FT /codon_start=1 FT /transl_table=1 FT /gene="p7" FT /product="p7k" FT /db_xref="GOA:Q8V993" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q8V993" FT /protein_id="BAF47096.1" FT /translation="MDSQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2645..2830 FT /codon_start=1 FT /transl_table=1 FT /gene="p9" FT /product="p9k" FT /db_xref="GOA:Q8UYH9" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q8UYH9" FT /protein_id="BAF47097.1" FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN FT SSVKTQYVGISTNGDG" FT CDS 2817..3989 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="CP 38k" FT /db_xref="GOA:A2V6E6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A2V6E6" FT /protein_id="BAF47098.1" FT /translation="MAMVKRINNLPTVKLTKQALPLLTNPKIVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGARPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSTPWAENVLVVPCDNTWRYMNDTSAV FT DRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVT FT SSGASALTFTLNSTGVPNSTNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4271 BP; 1080 A; 886 C; 1063 G; 1242 T; 0 other; gggattactc tagccgaatc cccgactttc ttggtttttg tgagttagtt cgtatattgg 60 ttatctctct taatcaatac aggttagcaa tggatactgg tttgaaattt cttgtttctg 120 gaggtttagc cacctcatct gttattagga aagtgagtgc tgtgagttca ttggattcgt 180 cccttccttc atcgtctata ctatctgcca ttcatgggtc ttggactagt gctatcagcc 240 acgattgtag caagattgcc aaggttgcca ccgtgattgg aattggttat cttggggttc 300 gaattggtgc cgcatggtgt cgtcgtgccc ccggaataac gaattctata attacatacg 360 gggaagaagt ggttgagcaa gtaaaggtgg atattgatga agatgctgaa gaggagtccg 420 atactggtga ggaaattgtg gttggcacga taggtattgg tatacacact aacgtcaacc 480 ctgaggttcg agctaagcgc agacatagat cgaggccatt cattaagaag attgtgaatt 540 taacgaaaaa tcactttggt ggatgccccg attcaagtaa atcgaacgtc atggctgtta 600 gcaagtttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag acgagattga 660 tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat gtacgatatt tccagtaaag 720 ctctgttaaa cagcgagata ttgacagaaa acagagctac actggaccgc ctcaaaactc 780 ttgacgggtg gctgtcacat ttagtgtgcc acccccttag cgcgaaggct tggaggcggg 840 cgattgacaa cttatgtggt cttcctgact ggaaggcctt caagttggtc aactaggggt 900 gcctagagga actcgctggg ttctgtactt cggtacggag ggggacgcac ccagacatga 960 ccgagtttcc tcaggatcgt cccattaaga cacgcaaact gtattgtttg gggggagttg 1020 gaactagcgt gaagttcaat gtacacaaca actctctagc taaccttcgg cgcggtctta 1080 tagaacgcgt tttctttgtt gaaaatgata agaaggaact agagcctgcc cctaaacccc 1140 ttagtggtgt gtttgaccgc ttaacctggt ttcgtcggaa actccataac attgtgggta 1200 ctcattccag tattagtcca ggtaaattct tggatttcta tactggcagg aggcgtacaa 1260 tctatgaggg tgccgtgaag tcattggagg ggttaagtgt tcaaagaaag gatgcctatt 1320 tgaaaacgtt tgttaaggcg gagaagatta acaccactaa gaagcctgac ccagctccgc 1380 gggtcataca accgaggaac gtaagatata atgttgaggt tggtcgttat ctacgtaggt 1440 ttgagcatta cctctatcga ggaattgatg aaatctggaa tggccccact ataattaaag 1500 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct ttcgtgagcc 1560 ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca tgtatcctcc gacgctctta 1620 aatgggaaca cagtgtttat cttgatgctt tttgccatga ttcttatctt gcagaattgt 1680 tggagtggca attagtcaat aaaggagtcg ggtatgccag tgacggaatg atcaaatata 1740 aggttgatgg gtgccggatg agtggtgaca tgaatacagc tatgggcaac tgtctgattg 1800 cctgtgctat cacacatgat ttcttccgta gtcgtggtat cagggcgcgt ttgatgaaca 1860 atggtgatga ctgtgtcgta atatgtgaaa aagaatgtgc cgcggtggtt aaagccgaca 1920 tggtaaggca ctggagacaa ttcgggtttc aatgcgagct cgaatgcgac gcagaagtct 1980 tcgagcaaat tgagttttgt caaatgcgac ctgtgtacga cggggaaaaa tatgtgatgg 2040 tgcggaatcc gctagttagc ctgtctaaag attcatactc agtcggccca tggaatggag 2100 tcaaccatgc acgcaagtgg gtaaatgccg taggcttgtg tggcttatcc ctcactggtg 2160 gaattcctgt tgtccagagt tactataata tgatgattcg taatactcaa tccgtgaaca 2220 gttctggcat tctccgggat gtcagttttg ctagtggatt tcgggagtta gcgcgattgg 2280 gtaacaggaa aagtggtgcc atatcagaag acgcccgttt tagcttttat ctcgcatttg 2340 gcattactcc agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt 2400 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggact ctcaacgaac 2460 tgtagaacaa actaatcctc ggggaagaag taaagaacgt ggtgacagcg ggggaaaaca 2520 gaagaactca atggggcgaa agatagccaa tgatgctatc tctgaatcga agcagggagt 2580 tatgggtgct agcacatata ttgctgataa aattaaggtg actatcaact ttaattttta 2640 gtgtatggct tgttaccgtt gtgactccag ccccggggat tactctggag ctttgcttat 2700 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag gaaatactta 2760 cgttcaccac ttcgataatt cttccgttaa aacgcaatac gttggcatct ctacaaatgg 2820 cgatggttaa acgcattaat aatttaccaa cagtgaagct tactaagcag gccctgcccc 2880 tgttaacgaa tcctaaaatt gtgaataagg ctatagatgt ggttcctttg gtcgtccaag 2940 gtggtcagaa attgtccaaa gctgccaagc ggctgcttgg cgcttatggt ggtaacattt 3000 cttacactga gggtgctaga cctggtgcaa tatccgctcc agttgccatt agtaggcgag 3060 tggcgggtat gaagcctagg tttgttcgat ccgaaggatc agtgaagata gttcataggg 3120 agtttattgc ctctgttctt ccgtcaaatg atctcaccgt gaataatggt gatgtcaata 3180 tcggtaagta tagggtcaat cccagtaata acgctttatt cacatggctt cagggacaag 3240 cgcaattata tgatatgtac agatttactc gactacgatt tacctatatt ccaaccaccg 3300 gatccacttc tacaggtcgt gtttctattc tttgggatag agactctcag gatcccctcc 3360 ctattgaccg cgccgctatt agttcttatg ctcattacgc tgattcaacg ccttgggcag 3420 agaacgtttt agtggttccg tgtgacaata cgtggaggta catgaatgat accagcgcag 3480 tggaccggaa gttggttgat tttgggcagt tcctctttgc tacctattct ggtgctggtg 3540 ccaccgccca cggtgatctc tacgttgagt atgctgtgga attcaaagat ccccagccta 3600 ttgctggaat ggtttgtatg tttgatcgct tggtctcttt ctctgaagtc ggatccacaa 3660 ttaaaggagt caattatatt gctgatcgtg atgtgataac cactgggggc aatattggtg 3720 tcaacatcaa tattcccggg acttacctcg ttacgattgt tcttaacgct acatcaattg 3780 gctccctcac cttcactggt aattctaaac tcgtaggcaa tagtcttaac gttaccagca 3840 gtggcgcttc agctcttaca ttcaccctta attccactgg tgtgcccaac agtactaatt 3900 cttcattctc tgtgggcacc gttgttgcat tgaccagggt tcgtatgacg attactcgct 3960 gctctcctga aactgcctac ctcgcctaag aattaattta ctatactcca aaatctggtc 4020 tcccctatac ctacctgttc tcagccagat ctctgttctg gtgtcctata ggtgtccttg 4080 tcgtgtgtag tgcggtctgg ctaaccgtaa cggcgtatcg gctcggttct ccgatgatta 4140 ggctccggga tgcacgacat agctgaagat ggatggtgtt cggtagatca ccgctagcaa 4200 aatacactct gtgtggggcg tgctagtgga tagtcatgta tgtttgagat gggttatagg 4260 cccatcccgc c 4271 //