ID AB250685; SV 1; linear; genomic RNA; STD; VRL; 4271 BP. XX AC AB250685; XX DT 17-FEB-2007 (Rel. 90, Created) DT 31-JUL-2009 (Rel. 101, Last updated, Version 3) XX DE Melon necrotic spot virus genomic RNA, complete genome, strain: Kochi. XX KW . XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4271 RA Tsuda S.; RT ; RL Submitted (16-FEB-2006) to the INSDC. RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan XX RN [2] RX DOI; 10.1094/PHYTO-98-2-0181. RX PUBMED; 18943194. RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J., RA Knight L.M., Tsuda S.; RT "High temperatures activate local viral multiplication and cell-to-cell RT movement of Melon necrotic spot virus but restrict expression of systemic RT symptoms"; RL Phytopathology 98(2):181-186(2008). XX DR MD5; 774b562378eeb20ff5efb8ddba572986. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC5954562; 29868081. XX FH Key Location/Qualifiers FH FT source 1..4271 FT /organism="Melon necrotic spot virus" FT /strain="Kochi" FT /mol_type="genomic RNA" FT /country="Japan:Kochi" FT /isolation_source="Melon" FT /db_xref="taxon:11987" FT CDS 90..2465 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:894..896,aa:OTHER) FT /gene="p88" FT /product="p88k-polymerase" FT /note="readthrough product" FT /db_xref="GOA:A2V6D7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A2V6D7" FT /protein_id="BAF47089.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL FT EGLSVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL" FT CDS 90..896 FT /codon_start=1 FT /transl_table=1 FT /gene="p28" FT /product="p28k-polymerase" FT /db_xref="UniProtKB/TrEMBL:A2V6D8" FT /protein_id="BAF47090.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN" FT CDS 2444..2641 FT /codon_start=1 FT /transl_table=1 FT /gene="p7" FT /product="p7k" FT /db_xref="GOA:A2V6D9" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:A2V6D9" FT /protein_id="BAF47091.1" FT /translation="MDSQRAVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2645..2830 FT /codon_start=1 FT /transl_table=1 FT /gene="p9" FT /product="p9k" FT /db_xref="GOA:Q8UYH9" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q8UYH9" FT /protein_id="BAF47092.1" FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN FT SSVKTQYVGISTNGDG" FT CDS 2817..3989 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="CP 38k" FT /db_xref="GOA:A2V6E1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A2V6E1" FT /protein_id="BAF47093.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSNDLTVNNGDANIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAEDVLVVPCDNTWRYMNDTNAV FT DRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRSVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVT FT SSGVSALTFTLNSTGVPNSTNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4271 BP; 1064 A; 889 C; 1077 G; 1241 T; 0 other; gggattactc tagccggatc cccgactttc ttggtttttg tgagttagtt cgtatattgg 60 ttatctatct tagtcaatac aggttagcaa tggatactgg tttgaaattt cttgtttccg 120 gaggtttagc cacctcatct gttattagga aagtgagtgc tgtgagttcc ttggattcgt 180 cccttccttc atcgtctata ctatctgcca ttcatgggtc ttggactagt gctatcagcc 240 acgattgtag caagattgcc aaggttgcca ccgtgattgg aattggttat ctcggggttc 300 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagc gaattctata attacatatg 360 gggaagaagt ggttgagcaa gtaaaggtgg atattgatga agatgctgaa gaggagtccg 420 atactggtga ggaaattgtg gttggcacga taggtattgg tatacacaca aatgtcaacc 480 ctgaagttcg agctaagcgc agacatagat cgaggccatt tattaagaag attgtgaatt 540 taacgaaaaa tcactttggt ggatgccccg attcaagcaa atcgaacgtc atggctgtta 600 gcaaatttgt ttatgaacaa tgtaaacagc ataattgtct tccacatcag acgagattga 660 tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat gtacgacatt tctagtaaag 720 ctctgttgaa cagcgagata ttaacagaaa acagagctac actggaccgc ctcaaaactc 780 ttgacgggtg gctgtcacat ttggtgtgcc acccccttag cgcgaaggct tggaggcggg 840 cgattgataa cttgtgtggc cttcctgatt ggaaggcctt caagttggtc aactaggggt 900 gcctagagga actcgctggg ttctgtactt cggtacggag ggggacgcac ccagacatga 960 ccgagtttcc tcaggatcgt cccattaaga cacgcaaact gtattgtttg gggggagttg 1020 gaactagcgt gaagttcaat gtacacaata actctctagc taaccttcgg cgcggtctta 1080 tagaacgcgt tttctttgtt gaaaatgata agaaggaact agagcctgcc cctaaacccc 1140 ttagtggtgt gtttgaccgc ttaacctggt ttcgtcggaa actccataac attgtgggta 1200 ctcattccag tattagtccg ggtcaattct tggatttcta tactggcagg aggcgtacaa 1260 tttatgaagg tgccgtgaag tcattggagg ggttaagtgt tcaaagaagg gatgcctatt 1320 tgaaaacgtt tgttaaggcg gagaagatta acaccactag gaagcctgac ccagctccgc 1380 gggtcataca accgaggaac gtaagatata atgttgaggt tggtcgttat ctacgtaggt 1440 ttgagcatta cctctatcga ggaattgatg aaatctggaa tggccccaca ataattaaag 1500 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct ttcgtaagcc 1560 ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca tgtatcctcc gacgctctta 1620 aatgggaaca tagtgtgtat cttgatgctt tttgccatga ttcttatctt gcagaattgt 1680 tggagtggca attagtcaat aagggggtcg gatatgccag tgatggaatg atcaaatata 1740 aggttgatgg gtgccggatg agtggtgaca tgaatacagc tatgggcaac tgtctgattg 1800 cctgcgctat cacacatgat ttcttccgaa gtcgtggcat cagggcgcgt ttgatgaaca 1860 atggtgatga ctgtgtcgta atatgtgaaa aagaatgtgc cgcggtggtt aaagccgaca 1920 tggtaaggca ctggagacaa ttcgggtttc aatgtgagct cgaatgcgac gcagaagtct 1980 tcgagcaaat tgagttttgt caaatgcggc ctgtgtacga cggggaaaag tatgtgatgg 2040 tgcggaatcc gttggttagc ctgtctaaag attcatactc agtcggccca tggaacggaa 2100 tcaaccatgc acgcaagtgg gttaacgctg taggcttgtg tggcttatcc ctcactggtg 2160 gaattcctgt tgtccaaagt tactataaca tgatgattcg taacactcaa tccgtgaaca 2220 gttctggcat tcttcgagat gttagttttg ctagtggatt tcgggagtta gcgcgattgg 2280 gtaacaggaa aagtggtgcc atatcagaag acgcccgttt tagcttttat ctcgcatttg 2340 gcattactcc agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt 2400 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggact ctcaacgagc 2460 tgtagaacaa actaatcctc ggggaaggag taaagaacgt ggtgacagcg ggggaaaaca 2520 gaagaactca atggggcgaa agatagccaa tgatgctatc tctgaatcga agcagggagt 2580 tatgggtgct agcacataca tcgctgataa aatcaaggtg actataaact ttaattttta 2640 gtgtatggct tgttatcgtt gtgactccag ccccggggat tactctggag ctctgcttat 2700 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag gaaatactta 2760 cgttcaccac ttcgataatt cttccgttaa aacgcaatac gttggcatct ctacaaatgg 2820 cgatggttaa acgcattaat aatttaccga cagtgaagct tgctaagcag gccctgcccc 2880 tgctaacgaa tcctaaaatt gtgaataagg ctatagatgt ggttcctttg gtcgtccaag 2940 gtggtcagaa attgtccaaa gctgccaagc ggttgcttgg tgcttatggt ggtaacattt 3000 cttatactga gggcgctaag cctggtgcta tatccgcccc agttgccatt agtaggcgag 3060 tggcgggtat gaagcctagg tttgttcgat ccgaaggatc tgtgaagata gttcataggg 3120 agtttattgc ctctgttctt ccgtcgaatg atctcaccgt gaataacggt gatgccaata 3180 tcggtaagta tagggtcaat cccagtaata acgctttatt cacatggctt cagggacaag 3240 cgcaattgta tgatatgtac agatttactc ggcttcgatt tacctatatt ccaaccaccg 3300 gatccacttc cacaggtcgt gtctctattc tctgggatag agactctcag gatcccctcc 3360 ctattgaccg cgccgccatt agttcttatg cgcattacgc tgattcagcg ccttgggcag 3420 aggacgtttt agtggttccg tgtgacaaca cgtggaggta tatgaatgac accaatgctg 3480 tggaccggaa gttggttgat tttgggcagt tcctctttgc tacttattct ggtgctggtg 3540 ccaccgccca cggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccta 3600 ttgctggaat ggtctgtatg tttgatcgct cggtctcttt ctctgaagtc ggatctacaa 3660 ttaaaggagt caattacatt gctgaccgtg atgtgataac cactggaggc aatattggtg 3720 ttaatatcaa tattccaggg acttatctcg tcacgattgt acttaacgcc acttcaattg 3780 gctcccttac cttcactggc aattctaaac tcgtaggcaa tagtcttaac gttactagca 3840 gcggcgtttc agctcttaca ttcaccctta attccactgg tgtgcccaac agtaccaatt 3900 cttctttctc tgtgggcact gtcgttgcat tgactagggt tcgtatgacg attactcgct 3960 gctctcctga aactgcctac ctcgcctaaa attacattta ctatactccg aaatctggtc 4020 tcccttatac ctacctgttc tcagccagat ctctgttctg gtgtcctata ggtgtccttg 4080 tcgtgtgtag tgcggtctgg ctaaccgtaa cggcgtatcg gctcggttct ccgacgatta 4140 ggctctggga tgtacgacat agctgaagat ggatggtgtt cggtagatca ccgctagcaa 4200 aatacactct gtgtggggcg tgctagtgga tagtcatgta tgtttgagat gggttatagg 4260 cccatcccgc c 4271 //