Dbfetch
ID AB250684; SV 1; linear; genomic RNA; STD; VRL; 4270 BP. XX AC AB250684; XX DT 17-FEB-2007 (Rel. 90, Created) DT 31-JUL-2009 (Rel. 101, Last updated, Version 3) XX DE Melon necrotic spot virus genomic RNA, complete genome, strain: Chiba. XX KW . XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4270 RA Tsuda S.; RT ; RL Submitted (16-FEB-2006) to the INSDC. RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan XX RN [2] RX DOI; 10.1094/PHYTO-98-2-0181. RX PUBMED; 18943194. RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J., RA Knight L.M., Tsuda S.; RT "High temperatures activate local viral multiplication and cell-to-cell RT movement of Melon necrotic spot virus but restrict expression of systemic RT symptoms"; RL Phytopathology 98(2):181-186(2008). XX RN [3] RX DOI; 10.1016/j.virol.2009.05.012. RX PUBMED; 19501870. RA Mochizuki T., Hirai K., Kanda A., Ohnishi J., Ohki T., Tsuda S.; RT "Induction of necrosis via mitochondrial targeting of Melon necrotic spot RT virus replication protein p29 by its second transmembrane domain"; RL Virology 390(2):239-249(2009). XX DR MD5; 2b9f1f18481ca23f79173e661693791d. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC5954562; 29868081. XX FH Key Location/Qualifiers FH FT source 1..4270 FT /organism="Melon necrotic spot virus" FT /strain="Chiba" FT /mol_type="genomic RNA" FT /country="Japan:Chiba" FT /isolation_source="Melon" FT /db_xref="taxon:11987" FT CDS 90..2465 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:894..896,aa:OTHER) FT /gene="p88" FT /product="p88k-polymerase" FT /note="readthrough product" FT /db_xref="GOA:A2V6D2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A2V6D2" FT /protein_id="BAF47084.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIVNSIITYGEEVVEQVKVDINE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVYLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL FT EGLSVQRKDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL" FT CDS 90..896 FT /codon_start=1 FT /transl_table=1 FT /gene="p28" FT /product="p28k-polymerase" FT /db_xref="UniProtKB/TrEMBL:A2V6D3" FT /protein_id="BAF47085.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIVNSIITYGEEVVEQVKVDINE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVYLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN" FT CDS 2444..2641 FT /codon_start=1 FT /transl_table=1 FT /gene="p7" FT /product="p7k" FT /db_xref="GOA:Q006Z8" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q006Z8" FT /protein_id="BAF47086.1" FT /translation="MDPQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2645..2830 FT /codon_start=1 FT /transl_table=1 FT /gene="p9" FT /product="p9k" FT /db_xref="GOA:Q8UYH9" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q8UYH9" FT /protein_id="BAF47087.1" FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN FT SSVKTQYVGISTNGDG" FT CDS 2817..3989 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="CP 38k" FT /db_xref="GOA:A2V6D6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A2V6D6" FT /protein_id="BAF47088.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSNDLTVNNGDTNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRVTYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSSPWAENVLVVPCDNTWRYMNDTNAM FT DRKLVDFGQFLFATYSGTGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNVT FT SSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4270 BP; 1073 A; 877 C; 1065 G; 1255 T; 0 other; gggattactc tagccgaatc cccgactttc ttggtttctg tgagttagtt cgtatattgg 60 ttgtctatct caatcaatac aggttagcaa tggatactgg tttgaaattt cttgtttccg 120 gaggtttagc cacctcatct gttattagga aagtgagtgc tgtgagttca ttggattcgt 180 cccttccttc atcgtctata ctatctgcca ttcatgggtc ttggactagt gctatcagcc 240 acgattgtag caagattgcc aaggttgcca ccgtaattgg aattggttat cttggggttc 300 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagt gaactctata attacatacg 360 gggaagaagt ggttgagcaa gtaaaggtgg atattaatga agatgctgaa gaggagtccg 420 atactggtga ggaaattgtg gttggcacga taggtattgg tatacacact aacgtcaacc 480 ctgaagttcg agctaagcgt agacatagat cgaggccatt cattaagaaa attgtgtatt 540 taacgaaaaa tcactttggt ggatgtcccg attcaagtaa atcgaacgtc atggctgtta 600 gcaaatttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag acgagattga 660 tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat gtacgacatt tccagtaaag 720 ctctgttaaa cagcgagata ttaacagaaa acagagccac actggaccgc ctcaaaactc 780 ttgatgggtg gctgtcacat ttagtgtgcc acccccttag cgcgaaggct tggaggcggg 840 cgattgacaa cttgtgtggt cttcctgact ggaaggcctt caagttggtc aactaggggt 900 gcctagagga actcgctggg ttctgtactt cggtacggag agggacgcac ccagacatga 960 ccgagtttcc tcaggatcgt cccattaaga cacgcaaact gtattgtttg gggggagttg 1020 gaaccagcgt gaagttcaat gtgcacaata actctctagc taaccttcgg cgcggtctca 1080 tagaacgtgt tttctttgtg gaaaatgata agaaggaact agagcctgcc cctaaacccc 1140 ttagtggtgt gtttgatcgc ttaacctggt ttcgtcggaa actccataat attgtgggta 1200 ctcattccag tattagtcca ggtcaattct tggatttcta tactggcagg aggcgtacaa 1260 tttatgaagg tgccgtgaag tcattggagg ggttaagtgt tcaaagaaag gatgcctatt 1320 tgaaaacgtt tgttaaggcg gagaagatta acaccactag gaagcctgac ccagctccgc 1380 gggtcataca accgaggaac gtaagatata atgttgaggt tggtcgttat ctacgtaggt 1440 ttgagcatta cctctatcga ggaattgatg aaatctggaa tggccccacg ataattaaag 1500 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct ttcgtgagcc 1560 ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca tgtatcctcc gacgctctta 1620 aatgggaaca tagtgtttat cttgatgctt tttgccatga ttcttatctt gcagaattgt 1680 tggagtggca attagtcaat aagggagtcg ggtatgccag tgatggaatg atcaaatata 1740 aggttgatgg gtgccgaatg agtggtgata tgaatacagc tatgggtaac tgtttgattg 1800 cctgtgccat cacacatgat ttcttccgta gtcgtggcat cagggcgcgt ttgatgaaca 1860 atggtgatga ctgtgtcgta atatgcgaaa aagaatgtgc cgcggtggtt aaagccgaca 1920 tggtaaggca ctggagacaa ttcgggtttc aatgtgagct cgaatgcgac gcagaagtct 1980 tcgagcaaat tgagttttgt caaatgcggc ctgtgtacga cggggaaaaa tatgtgatgg 2040 tgcggaatcc gttagttagt ctgtctaaag attcatactc agtcggccca tggaatggaa 2100 tcaaccatgc acgcaagtgg gttaatgctg ttggcttgtg tggcttatcc ctcactggtg 2160 gaattcctgt tgtccaaagt tactataata tgatgattcg taacactcag tccgtgaaca 2220 gttctggcat tcttcgggat gtcagttttg ctagtggatt tcgggagtta gcgcgattgg 2280 gtaacaggaa aagtggtgct atatcagaag acgcccgttt tagcttttat ctcgcatttg 2340 gcattactcc agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt 2400 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggacc ctcaacgaac 2460 tgtagaacaa actaatcctc ggggaagaag taaagaacgt ggtgacagcg ggggaaaaca 2520 gaagaactca atggggcgaa agatagccaa tgatgctatc tctgaatcga agcagggagt 2580 tatgggtgct agcacataca tcgctgataa aattaaggta actatcaact ttaattttta 2640 gtgtatggct tgttaccgtt gtgactccag ccccggggat tactctggag ctctgcttat 2700 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag gaaatactta 2760 cgttcaccac ttcgataatt cttccgttaa gacgcaatac gttggcatct ctacaaatgg 2820 cgatggttaa acgcattaat aatttaccaa cagtgaagct tgctaagcag gccctgcccc 2880 tgctaacgaa tcctaaaatt gtgaataagg ccatagatgt ggttcctttg gtcgtccagg 2940 gtggtcagaa attgtccaaa gctgccaagc ggttgcttgg cgcttatggt ggtaacattt 3000 cttacactga gggcgctaag cctggtgcta tatccgctcc agttgccatt agtaggcgag 3060 tggcggggat gaagcctagg tttgttcgat ccgaaggatc tgtgaagata gttcataggg 3120 agtttattgc ctctgttctt ccgtcgaatg atctcaccgt gaacaatggt gataccaata 3180 tcggtaagta tagggtcaat cccagtaata acgctttatt cacatggctt cagggacaag 3240 cgcaattata tgatatgtac agatttactc gacttcgagt tacctatatt ccaactaccg 3300 gatccacttc cacaggtcgt gtttctatcc tttgggatag agactctcag gatcccctcc 3360 ctattgatcg cgccgctatt agttcttatg ctcattacgc agactcatcg ccttgggcag 3420 agaacgtttt agtggttccg tgtgacaata cgtggaggta tatgaatgat actaatgcaa 3480 tggatcggaa gttggttgat tttgggcagt ttctctttgc tacttattct ggtactggtg 3540 ccaccgccca tggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccga 3600 ttgctggaat ggtgtgtatg tttgatcgct tggtctcttt ctctgaagtc ggatctacaa 3660 ttaaaggagt caattatatt gctgatcgtg acgtgataac tacggggggt aatattggtg 3720 tcaacatcaa tattcccggg acttatctcg tcacgattgt tcttaatgcc acatcaattg 3780 gccccctcac cttcactggt aattctaaac tcgtaggcaa tagtcttaac gttaccagca 3840 gtggtgcttc tgctctcaca tttaccctta actccactgg tgtgcccaac agttccaatt 3900 cttcattctc tgtgggcact gttgttgcat tgactagggt ccgtatgacg atcactcgct 3960 gctctcctga aactgcctac ctcgcctaaa atttaattta ctatactcca aatctggtct 4020 ctctcatacc ttcctgttct cagccagatc tctgttctgg tgtcctatag gtgtccttgt 4080 cgtgtgtagt gcggtctggc taaccgtaac ggcgtatcgg cttggttctc cgacgattag 4140 gctccgggat gtacgacata gttgaagatg gatggtgttt ggtagatcac cgctagcaaa 4200 atacactctg tgtggggcgt gctagtggat agtcatgtat gtttgagatg ggttataggc 4260 ccatcccgcc 4270 //