ID   AB246171; SV 1; linear; genomic DNA; STD; VRL; 1474 BP.
XX
AC   AB246171;
XX
DT   22-JAN-2006 (Rel. 86, Created)
DT   04-FEB-2009 (Rel. 99, Last updated, Version 3)
XX
DE   Tobacco leaf curl Indonesia virus C1, V2, V1 genes for
DE   replication-associated protein, putative V2 protein, coat protein, partial
DE   and complete cds.
XX
KW   .
XX
OS   Tobacco leaf curl Indonesia virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1474
RA   Hidayat S.H., Orawan C., Noor A.;
RT   ;
RL   Submitted (05-JAN-2006) to the INSDC.
RL   Contact:Sri Hendrastuti Hidayat Bogor Agricultura University, Plant
RL   Protection; Jl Kamper, Dramaga, Bogor, West Java, Indonesia, Bogor, West
RL   Java 16680, Indonesia
XX
RN   [2]
RA   Hidayat S.H., Orawan C., Noor A.;
RT   "Genetic diversity of geminivirus in Indonesia";
RL   Unpublished.
XX
DR   MD5; bbe04077faead06fa96a0225a16d01df.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1474
FT                   /organism="Tobacco leaf curl Indonesia virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Indonesia:Jember, East Java"
FT                   /isolation_source="Tobacco"
FT                   /collected_by="Sri Hendrastuti Hidayat"
FT                   /collection_date="1999"
FT                   /clone="pTobT8"
FT                   /PCR_primers="fwd_name: PAL1v1978, fwd_seq:
FT                   gcatctgcaggcccacatygtcttyccngt, rev_name: PAR1c715,
FT                   rev_seq: gatttctgcagttdatrttytcrtccatcca"
FT                   /db_xref="taxon:366679"
FT   CDS             complement(<1..669)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:Q2MH19"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH19"
FT                   /protein_id="BAE78397.1"
FT                   /translation="MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKIKI
FT                   CRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYID
FT                   KDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYHN
FT                   IKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGES
FT                   R"
FT   repeat_region   601..607
FT   regulatory      729..734
FT                   /regulatory_class="TATA_box"
FT   stem_loop       801..822
FT   CDS             952..1302
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V2"
FT                   /product="putative V2 protein"
FT                   /db_xref="GOA:Q2MH21"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH21"
FT                   /protein_id="BAE78398.1"
FT                   /translation="MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDL
FT                   ISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHV
FT                   SQAQNVQNVQKP"
FT   CDS             1112..>1474
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2MH20"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH20"
FT                   /protein_id="BAE78399.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTW
FT                   TNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRPDVSHVGKVCCXTDVTRGLGLTH
FT                   RTGKRFCVKPVYIMGKV"
XX
SQ   Sequence 1474 BP; 385 A; 328 C; 332 G; 428 T; 1 other;
     acggctctca ccctctatga caatactaac aggtctccat ggccgcgcag cggcatccct        60
     tacgttttcg gaaacccagc actcaagttc ttctggaact tgatcgaaag aagaagaaag       120
     aaatggacaa acaaaaacct ctgcacgagg tgtaaaaatc ctatctaaat tagctttaat       180
     attatgatat tgaaaaataa aatctttagg gagctcctct ctaataatag ctaaagctgc       240
     ttcggctgaa cctgaattta gggcctttgc agctgtgtcg ttagccgtct gttgacctcc       300
     tcgagcactt cttccgtcga cctggaattc tccccattcc agtgtgtctc cgtccttgtc       360
     gatataggac ttgacgtcgg agcttgattt agctccctga atgttcggat ggaaatgtgc       420
     tgacctggta ggggatgtaa ggtcgaagaa tctgttattt tggcacttgt atttcccttc       480
     gaactggata agcacgtgca gatgagggct cccatcttca tggagttctc tgcagatttt       540
     gattttttta tttgttgggg tgtttaggtt ttgtaattgg gaaagtgctt cttctttagt       600
     gagagagcac tgtgggtatg tgaggaaata atttttggca tttattaaaa aacgtttggg       660
     aggtgccatt tgacttggtc aatcgggtct caacaaactt gcgttagcaa tcggggaatg       720
     ggtcccaata tatagtgagg acctaaatgg cattattgta attctcgaaa gtaattcaaa       780
     tttcaaattt tgaatccaat agcggccatc cgtataatat taccggatgg ccgcgatttt       840
     tttaaagtgg tcccccccac taacaaatgt cccccaatca gaacgcgccc tcaaagctaa       900
     attattaact ggtcccctat ttatacttag tctccaagta ttatgttaaa catgtgggat       960
     cccctcgtaa acgaattccc agagactgtt cacggtctac ggtgtatgct agccgtaaaa      1020
     tatcttcaat tagttgaagc tacgtattct cctgatacga ttggatacga tctcgtacgc      1080
     gatttaattt cagtaattcg tgctcgcaat tatgtcgaag cgtcccgccg atatagtcat      1140
     ttccactccc gcctcgaagg tacgtcgtcg tctgaacttc gacacacccg cgatgagccg      1200
     tgctgctgcc cccactgtcc tcgtcaccaa caaaagaagg acatggacca acaggcccat      1260
     gtatcgcaag cccagaatgt acagaatgta cagaagccct gatgtgccca aaggttgtga      1320
     aggcccatgt aaggtccagt cttttgagtc tagacccgat gttagtcacg tgggtaaggt      1380
     ctgttgtana actgacgtca ctaggggttt aggtttaaca cataggacgg gtaagaggtt      1440
     ttgcgttaag cccgtctaca taatgggcaa ggtc                                  1474
//