ID   AB246170; SV 1; linear; genomic DNA; STD; VRL; 1491 BP.
XX
AC   AB246170;
XX
DT   22-JAN-2006 (Rel. 86, Created)
DT   04-FEB-2009 (Rel. 99, Last updated, Version 3)
XX
DE   Pepper yellow leaf curl Indonesia virus C1, C4, V2, V1 genes for
DE   replication-associated protein, putative C4 protein, putative V2 protein,
DE   coat protein, partial and complete cds.
XX
KW   .
XX
OS   Pepper yellow leaf curl Indonesia virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1491
RA   Hidayat S.H., Orawan C., Rusli E.S.;
RT   ;
RL   Submitted (05-JAN-2006) to the INSDC.
RL   Contact:Sri Hendrastuti Hidayat Bogor Agricultura University, Plant
RL   Protection; Jl. Kamper, Dramaga, Bogor, West Java, Indonesia, Bogor, West
RL   Java 16680, Indonesia
XX
RN   [2]
RA   Hidayat S.H., Orawan C., Rusli E.S.;
RT   "A New geminivirus associated with Pepper yellow leaf curl disease in
RT   Indonesia";
RL   Unpublished.
XX
DR   MD5; ae21a0c42807daccbe4240a5daff3fb2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1491
FT                   /organism="Pepper yellow leaf curl Indonesia virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Indonesia:Bogor, West Java"
FT                   /isolation_source="Pepper"
FT                   /collected_by="Sri Hendrastuti Hidayat"
FT                   /collection_date="1999"
FT                   /clone="pPL#8"
FT                   /PCR_primers="fwd_name: PAL1v 1978, fwd_seq:
FT                   gcatctgcaggcccacatygtcttyccngt, rev_name: PAR1c 715,
FT                   rev_seq: gatttctgcagttdatrttytcrtccatcca"
FT                   /db_xref="taxon:292477"
FT   CDS             complement(<1..672)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:Q2MH22"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH22"
FT                   /protein_id="BAE78393.1"
FT                   /translation="MPPPRRFKLQGKNYFLTYPHCSLTKEEALEQFKSLNTPVNKLFVK
FT                   VCRELHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM
FT                   DKAGDSIEWEEFQIDGRSARGGQQTVNDVYAQALNCGSKSDALQLIKELAPKDYVLQYH
FT                   NLSVNFDKIFAKPVDRFVSPYPSSSFDQVPEELRQWAAENVKDAAARPWRPISIVIEGE
FT                   SR"
FT   CDS             complement(<1..363)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C4"
FT                   /product="putative C4 protein"
FT                   /db_xref="GOA:Q2MH25"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH25"
FT                   /protein_id="BAE78394.1"
FT                   /translation="MDKAGDSIEWEEFQIDGRSARGGQQTVNDVYAQALNCGSKSDALQ
FT                   LIKELAPKDYVLQYHNLSVNFDKIFAKPVDRFVSPYPSSSFDQVPEELRQWAAENVKDA
FT                   AARPWRPISIVIEGESR"
FT   repeat_region   722..735
FT   regulatory      737..744
FT                   /regulatory_class="TATA_box"
FT   stem_loop       793..825
FT   CDS             946..1299
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V2"
FT                   /product="putative V2 protein"
FT                   /db_xref="GOA:Q2MH24"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH24"
FT                   /protein_id="BAE78395.1"
FT                   /translation="MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDL
FT                   ICLLRCKNYAEAFHRYSVVVTNVYNTPETKLRESVQSPCCCPHCPRHVLQTKSMGKSAY
FT                   VSETEILQGSKDQ"
FT   CDS             1106..>1491
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2MH23"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q2MH23"
FT                   /protein_id="BAE78396.1"
FT                   /translation="MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRA
FT                   WVNRPMYRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDITHTGKALCVSDVTRGSGIT
FT                   HRVGKRFCVKSVYIIGKVWMDENI"
XX
SQ   Sequence 1491 BP; 404 A; 313 C; 340 G; 434 T; 0 other;
     acgactctca ccttctatga caatgctaat gggcctccat ggccgcgcag cggcatcttt        60
     cacattttca gcagcccatt gtcgtagttc ttcaggaact tggtcaaacg acgacgacgg       120
     atatggtgaa acaaatctat ctacaggttt tgcaaatatt ttatcgaaat taacacttaa       180
     attgtgatac tgtagaacat aatcttttgg agcaagctct ttaatcaatt gaagagcatc       240
     tgacttactt ccacaattta gggcctgcgc ataaacatcg tttactgtct gctgaccacc       300
     tcgtgcagat ctgccatcta tctgaaattc ttcccattcg attgaatcac ccgctttgtc       360
     catgtacgac ttgacatcgg aacttgactt agctccctga atgttcggat ggaaatgtgc       420
     tgacctggtt ggggatacca ggtcgaagaa tctgttgttg gtgcagacgt atttcccttc       480
     gaattgtatg agcacatgga gatgagggct cccatcttcg tgaagttctc tacagacctt       540
     gacaaacagc ttgttgacag gagtgttaag ggatttgaac tgttcgagtg cttcttcttt       600
     ggttagagaa cagtgtggat atgttaagaa atagtttttg ccctgtaact taaaacgacg       660
     tggtggaggc atttggagtg tcgttttgta ttggagacaa tcacttctat ccctatgtat       720
     tggagacagg agacaatata tataagtcct ataatggctt ttaagtaatt ttgtacacca       780
     ttgaatggtt aaagcggcac tcgtataata ttaccgagtg ccgcgaaaat atttaaatgt       840
     ggtcccccaa gccagccttt tgactgacca atcacgttgt atctacaaag cttagttagt       900
     gcgtcccgca ctataaagat atggaccacc ttccactatc caaggatgtg ggatccgctt       960
     gttcatcctt ttcctgaaac cctacacggg tttcgatgca tgttggcgat caagtatctg      1020
     caaagcttag aggctacgta ttctcctgat acggttggag gtgaattcgt gaaggattta      1080
     atctgtctgt tgcggtgtaa aaattatgcc gaagcgttcc atcgatacag tgtcgtcgtt      1140
     accaatgtct ataacacgcc ggagactaaa ctacgcgagt cagtacagtc tccctgctgc      1200
     tgcccccact gccccaggca tgtcttacaa acgaagagca tgggtaaatc ggcctatgta      1260
     tcggaaaccg agattctaca ggggtcgaag gaccagtgat gttccaaggg gttgtgaagg      1320
     accttgtaag gtccaatcct ttgaacagag acatgacata acacatactg ggaaggccct      1380
     ttgtgtttct gatgtcacaa gaggtagtgg tattacgcac agagttggta aaagattctg      1440
     tgtgaaatct gtatatatta taggcaaagt atggatggac gaaaacataa a               1491
//