ID AB244418; SV 1; linear; genomic RNA; STD; VRL; 6001 BP. XX AC AB244418; XX DT 29-APR-2006 (Rel. 87, Created) DT 18-MAR-2014 (Rel. 120, Last updated, Version 5) XX DE Orchid fleck virus genomic RNA, segment RNA 2, complete sequence. XX KW . XX OS Dichorhavirus orchidaceae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; OC Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; OC Dichorhavirus. XX RN [1] RP 1-6001 RA Kondo H., Maeda T., Tamada T., Shirako Y.; RT ; RL Submitted (13-DEC-2005) to the INSDC. RL Contact:Hideki Kondo Okayama University, Research Institute for RL Bioresources; 2-20-1, Kurashiki, Okayama 710-0049, Japan XX RN [2] RA Kondo H., Maeda T., Shirako Y., Tamada T.; RT "Orchid fleck virus is a rhabdovirus with an unusual bipartitite genome"; RL J. Gen. Virol. 87:2413-2421(2006). XX RN [3] RC DOI:10.1016/j.virol.2014.01.007 RA Kondo H., Maruyama M., Chiba S., Andika I.B., Suzuki N.; RT "Transcriptional mapping of the messenger and leader RNAs of orchid fleck RT virus, a bisegmented negative-strand RNA virus"; RL Virology 452-453:166-174(2014). XX DR MD5; d124568db5889cebe8c5f9f9cd4cb9d9. DR EuropePMC; PMC3700308; 23616651. DR EuropePMC; PMC3735072; 23887919. DR EuropePMC; PMC5861215; 29593700. DR EuropePMC; PMC6636387. XX FH Key Location/Qualifiers FH FT source 1..6001 FT /organism="Dichorhavirus orchidaceae" FT /segment="RNA 2" FT /isolate="So" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:152177" FT misc_RNA 1..133 FT /note="leader RNA" FT mRNA 139..5851 FT /gene="L" FT CDS 183..5816 FT /codon_start=1 FT /transl_table=1 FT /gene="L" FT /product="polymerase" FT /db_xref="GOA:Q1MW97" FT /db_xref="InterPro:IPR014023" FT /db_xref="InterPro:IPR026890" FT /db_xref="InterPro:IPR039736" FT /db_xref="UniProtKB/TrEMBL:Q1MW97" FT /protein_id="BAE93584.1" FT /translation="MNSLFQECYTESLMDDNTDTIITGKGRSAHNEGEYHLKSALRSHS FT DYVKNKHQAKDLLKLSEHTSVYAPKNPCKLLPTLWRGVIEGEEWVEDEVIIYLRELYHD FT DETDDCALELLDAELEHVCHDDDKTGIMQGVVQCQEDAWNKHTIYGRANILRWALTRIV FT IDHNKEEPTELSPMGRKLADKVFAYSLSSSLSMMISRSWCHLMINDSPGTINIQHLINT FT LDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLKIIQLGDNLILNEGNDAFRGLASYEA FT ICVGAIINRGDSSVWDVGRFLNTMVQEVGSLGENYKTWSSDVLVILQGLKIQQVSCLHG FT MYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPPH FT TWTGPEGSNYIKQVLSLEKELDIHNIRYHLEDWENIRCEKTFEIPATYSLASCIKDRAI FT SPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGIDKSGLSKDNSIIGLY FT PKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLELNKKLDTLS FT RKQVTKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRTHEIFKSSY FT IYLSSGEYVPQVSLRGRLVQEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYVARQHGLK FT IDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKFKMETFMRHLSNYMEKKGLPLKT FT EETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSGVTVLS FT SKDMQIGPAAAFGRLICADLASLVTKDHPLSDGGEMWSDSISICRGGSRRKVNVKPNLK FT TPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWVSMIKSKFSQAANFACM FT SINTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKS FT QMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIA FT GQERHCMSYFAASSSVPHDLTPLRCPTATARRYRRLSWGKEILSITTPHPAAFLKPVIG FT DHQCDHNYVQTKTSGGNLINPHSRGPYPVYMGSYTREKFKPTEMAAAYGEEDLLSRPIH FT LMKLINWRYSSSSNMARILKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGGV FT PNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIYTSMIALFKKYGGIIHWHESCG FT ECIQQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHDMKRIRSVEDLGFRTVSY FT ESMSPLDRRTASISMLSAVISSSESRDKSSVTMSSIEMWAGTVNLTEIIPAVCLRVSVA FT ELMRTGEWSWPKPHLKKRIIMLLEPFIRSKLGRYQLLEMGVTLDELRSNNPGVLLDIVQ FT VVMDNSRMTPKIIPNRVSPSWVNDVICAKIYENEHIIFCSGCLTKGPCVDKVEICNDIL FT MEYTFKVCSATLPVLKGDMSQIICDRDFSNDPDWTSSPVQLFEMMDNPAAQFTPFPRDG FT PIAVSRPLGSAGLSSILDILAETNGIIMVGDDSVSITIWRQFRATRKVMIFKTGDNHLE FT AACDFICMAPDEADLLMDSESPDGKADVYYGDNIPIAPGWWIITSRKDVNRLYKYGKDM FT SPTRVLISKDRGQTRAICAVKMEQTPGQKWGDFQATYKKIEMRCGNYSGMVRNPTSKNK FT LISCAVSLFHRVNGDIEEAVKCCVTEMRTIFWRNELYTKKAKDLMYLMSTLHMAGMEGG FT IEFARRSIKPRAVRRPYRILIKTTARNNYKAANDVTDVRELFRVTPKPIGAPGGDIIIN FT IGK" FT misc_RNA 5852..6001 FT /note="trailer RNA" XX SQ Sequence 6001 BP; 1771 A; 1301 C; 1513 G; 1416 T; 0 other; acacaggaca accaactgtc tcattgcgaa gtcaaattcc gtgatgggtc cgtctttcct 60 agaataaggg aaggatacta taggattgat cctagttctt ctctacgctg ggtgcttcac 120 ggatcataaa aaacaaccaa ccatcatata ttattacgca tacacttttg aactaatcag 180 atatgaattc actatttcag gaatgttaca ccgagtccct gatggacgat aatacggaca 240 ccatcatcac cggtaagggg aggtctgccc acaatgaggg agaataccac ctaaagtctg 300 ccctgagaag ccacagtgat tatgtgaaaa acaagcatca agccaaggat ctgctaaagc 360 tcagtgaaca tacatctgta tatgcaccga aaaacccatg caagttactg cccactctat 420 ggagaggggt gattgaaggg gaggagtggg ttgaagatga ggttataata tacttgagag 480 agctctatca tgacgacgaa acagacgact gtgctcttga gctccttgat gcagagctgg 540 aacatgtgtg tcatgacgat gacaaaacag ggataatgca gggagtcgta cagtgtcagg 600 aggatgcatg gaacaaacat accatctacg gtagggccaa tatccttcga tgggccttga 660 caaggatagt gatcgatcac aataaagagg agcctacaga actcagcccc atggggagga 720 aattggccga taaggtgttt gcttattcac tgagcagctc attatctatg atgataagca 780 gaagttggtg tcatctgatg attaatgaca gcccaggcac catcaacatc cagcacttga 840 tcaacaccct ggataaactg acggaacgag tgaacataat gacctaccta actctctgca 900 ataagactgg actttcaagc atttatccat cagtagacat cactttgaaa ataattcagc 960 tgggtgacaa tttaatatta aatgaaggca atgatgcttt ccgcgggttg gccagttacg 1020 aagccatctg tgtcggtgcg ataatcaaca ggggcgattc gtctgtgtgg gatgttggta 1080 gattcctcaa cactatggta caagaggttg gatcattggg agagaactac aagacatggt 1140 catctgatgt cctggtgata ctgcaaggtt tgaagatcca gcaagtgtca tgcctgcatg 1200 gcatgtatcg tatctgggga catccagttg ttgatcttga gaagggcctc atgaagcttc 1260 gttcagtagc tctaatggag aaggagatcc caccagaatg tgccaggaat acctccaata 1320 tgttcaagga gatattcttc acgcaatact tcagacgcca caagttttac cccccacaca 1380 cctggaccgg tccggaagga agcaattaca tcaagcaggt cctatcactt gagaaagagt 1440 tggatataca caacataaga taccacttgg aggattggga gaacatcaga tgtgagaaga 1500 ccttcgagat tccggccaca tacagtcttg catcatgtat caaagacaga gctatatccc 1560 cgaaacggtc agagttggta tccatgataa tcagaggggg atctgtgatg agtcaaagct 1620 caaggagggg ggttctgaaa tggctggata gtaccatgat tcctgtgaga gaattcttgg 1680 atggcataga taaatcagga ttgtcaaaag acaactcaat tatcggcctg tacccaaagg 1740 aaagagagtt gaagatggag gccaggttct ttgctctaat gtcctttcaa atgaggttat 1800 actttacaat cacagagcat atggcaaatg acaacctctt ggactacttc cccatggtca 1860 caatgtctga cagcatgctg gagctaaaca agaagctgga cactctgagc cgaaagcagg 1920 ttacaaaaaa ggagggtgtg gtgcattatg tggtcaacat cgatttcaga aaatggaacc 1980 aacagatgag agaggagatg actgtcccca tgttccttga tgctgataga ctgtttggct 2040 acaccaatct ggtggggagg acacatgaga ttttcaagtc ctcatatata tacttatcct 2100 caggggaata tgtaccacaa gtctcactca gaggaaggtt ggtgcaagag gagccctaca 2160 gttggaccaa tgacccttct gggaaagagg gcctgcggca gaaatattgg accatcatga 2220 ctgcgtgtga cttaatgtat gtagctagac aacatgggtt gaagattgat ctggtgggcg 2280 ggggagacaa tcaggtgctg attgtggagg tgaccaccga caaggttgga gatggaggtg 2340 aattaacaac ggaggggaaa tccgagtgca aattcaagat ggaaacattc atgcgccatc 2400 tgtccaatta catggagaag aaaggcctgc cgctaaagac agaggaaacc tggatctccc 2460 ccaacctgct catgttcttc aagatgatgt attatgacca taccactctg gtgtcacctc 2520 tcaaacaggc ctcgagggtg tttccgttat ctaatgatca agtcatgact attggcaaca 2580 tggcagccac tgtgtcctca ggagtcacag tactatcctc caaggacatg cagattggcc 2640 cagcagctgc attcggaagg ctaatatgtg ccgacttagc atcattggtc accaaggatc 2700 atcccctgtc tgatggagga gagatgtggt cggacagcat aagcatttgc aggggaggct 2760 caaggaggaa ggtcaacgtt aagccgaacc tcaaaacccc aatgagaatc ttcctgtcat 2820 taacactcct acacaaagtc atgggaggtc cagccatagt atcacccctg ggtatgatga 2880 tgaggggatt tcctgatcca ctctgtgagc atttgacctg ggtcagtatg attaagtcaa 2940 aattctcaca ggccgctaac ttcgcttgta tgtctatcaa caccaaggtc ccttgggccc 3000 atctgcttga agacccggtc agtgtcaacc atgacgctcc catgcatgga ttggctgtac 3060 ttagaagaga agcagagcaa gctctcgcta aagcctctgg ctataagaat cgagatttta 3120 tggacctggc tcgctgttgc aacaagagtc aaatggaggg attggctgag gcactatgct 3180 ccggcaagaa tgtagatata agggtgttac atgatgttat gggtgcaagc ttaggagggt 3240 atttcaactc catagcctct aaggtaaaca agactgccac cgtcctaagg atgaacaaga 3300 gctcctccgt cattgccacc attgcaggac aggaaagaca ttgcatgagt tattttgctg 3360 cctcatcatc agtgcctcac gatctcactc ccctgagatg tccaacagcc acagctagac 3420 gatacagaag actgagctgg ggcaaggaaa tcctgtccat caccaccccg catcctgcag 3480 ccttcttgaa accagtgata ggagaccatc agtgtgacca caactatgtg cagaccaaga 3540 catcaggagg gaacctgatc aatccccact ctagagggcc gtatccggtt tatatgggct 3600 catacacgag ggagaagttc aagcctactg agatggcggc ggcttacgga gaagaggacc 3660 tactgtccag acccattcat ctgatgaagc taatcaattg gagatattca tcatcatcca 3720 acatggccag gatcctgaaa tgcctgctga gctctcttac tgatgctgat gccactcttt 3780 tctacggaat gatggagtgg attgcaggag atgcagagca tagatatcaa gacatggcga 3840 ccaaacatgg gggagttccc aatgtcgctc actccatact gtcttatgtc cgagctcaca 3900 ccaccacatt taggaaacac tcccgcggag ggaaaaatga gactctccac ttccaggctg 3960 tcatgatata tacatcaatg atagccctgt tcaagaaata tgggggaatc atccattggc 4020 atgagagctg tggcgaatgc atccagcaaa ctgtgggcaa cgttgatgtg gtactgacaa 4080 agagggtgga gttcccgatc ctgaaaggaa atctctttgc atatgtcccg gcggaaagta 4140 taaagtttca ctaccatgac atgaagagga ttcggtctgt ggaggatctg ggattccgta 4200 ctgtgtcata cgaatccatg agccccttgg atagaagaac tgccagcatc agcatgctgt 4260 ccgcagtgat atcgtccagt gagtctaggg ataaatcatc tgttaccatg agtagcatag 4320 agatgtgggc cgggactgtc aatctcacag agatcatccc tgcagtatgc ctgagggtgt 4380 cggtggccga actcatgagg acgggcgaat ggtcatggcc caagccccac ctcaagaaaa 4440 gaataatcat gctactagag ccattcataa ggtcaaaact tgggaggtac cagctgttgg 4500 aaatgggtgt gaccctggat gaactacgat ccaacaaccc gggggtgctc ctagacattg 4560 ttcaggtggt tatggataac agcagaatga caccgaaaat tatcccgaat agagtctctc 4620 ccagttgggt caatgacgtc atatgtgcta agatttatga gaatgagcat ataatcttct 4680 gttccggatg tctgacaaaa ggcccatgtg tggataaagt ggagatatgc aatgacatcc 4740 tcatggaata caccttcaag gtgtgttcgg ctacattgcc agtcctcaaa ggagacatgt 4800 ctcagattat atgtgatagg gacttctcga atgacccaga ttggacttca tcgcctgtcc 4860 agttgtttga aatgatggac aatccggctg ctcaattcac tccattccca agggacgggc 4920 ccatagcagt gtcaagacca ttgggcagtg ccggattgtc aagcatcctg gatatactgg 4980 cagagaccaa tggaatcatc atggtcgggg atgacagtgt cagcatcact atatggagac 5040 agtttagagc aaccaggaag gtgatgattt tcaagacagg tgataaccac cttgaagctg 5100 cctgtgactt tatatgtatg gccccagatg aagcggacct gctcatggat agtgaaagcc 5160 cggatgggaa ggctgacgta tattatgggg ataacattcc tatagcgccc ggttggtgga 5220 ttataactag caggaaagat gtcaacagat tgtacaaata tgggaaggac atgagcccca 5280 ccagggtact aatctccaag gatagaggtc aaaccagagc aatctgtgct gtcaagatgg 5340 agcagacccc gggccagaag tggggagatt ttcaggccac atacaagaag attgaaatga 5400 gatgcggaaa ctacagtggg atggtaagaa atcccacaag caagaacaag ttaatatcat 5460 gtgcggtgtc attattccac agggtcaatg gagatataga agaggcagtc aaatgctgtg 5520 tgacggagat gaggacgatt ttctggagga acgaattata tactaagaaa gcaaaggatc 5580 tcatgtacct gatgtcaaca ttgcacatgg caggcatgga gggagggata gagtttgcaa 5640 gacgatctat caagcctaga gcagtgagac gaccttacag aatcctcatc aagactaccg 5700 ccagaaacaa ttataaggct gccaatgatg tcacagacgt gagagagcta ttcagggtaa 5760 ctcccaagcc tatcggagca cccgggggag atatcatcat aaatatcggg aaataagtaa 5820 ttttgtttaa attatataca tttaaagaaa accgggtatc tcgggctccc ccccactatc 5880 gtatattttt gttcacaact gcgttaagaa ggactaggac taggtcccgg aggtgcaact 5940 gggtcacacc ggagtcgcaa ggagatttca tcaatccatg tactgttgat ctgtcctgtg 6000 t 6001 //