ID AB244417; SV 1; linear; genomic RNA; STD; VRL; 6413 BP. XX AC AB244417; XX DT 29-APR-2006 (Rel. 87, Created) DT 18-MAR-2014 (Rel. 120, Last updated, Version 5) XX DE Orchid fleck virus genomic RNA, segment RNA 1, complete sequence. XX KW . XX OS Orchid fleck dichorhavirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Dichorhavirus. XX RN [1] RP 1-6413 RA Kondo H., Maeda T., Tamada T., Shirako Y.; RT ; RL Submitted (13-DEC-2005) to the INSDC. RL Contact:Hideki Kondo Okayama University, Research Institute for RL Bioresources; 2-20-1, Kurashiki, Okayama 710-0049, Japan XX RN [2] RX DOI; 10.1099/vir.0.81811-0. RX PUBMED; 16847138. RA Kondo H., Maeda T., Shirako Y., Tamada T.; RT "Orchid fleck virus is a rhabdovirus with an unusual bipartite genome"; RL J. Gen. Virol. 87(Pt 8):2413-2421(2006). XX RN [3] RC DOI:10.1016/j.virol.2014.01.007 RX DOI; 10.1016/j.virol.2014.01.007. RX PUBMED; 24606694. RA Kondo H., Maruyama M., Chiba S., Andika I.B., Suzuki N.; RT "Transcriptional mapping of the messenger and leader RNAs of orchid fleck RT virus, a bisegmented negative-strand RNA virus"; RL Virology 452-453:166-174(2014). XX DR MD5; a904fbe7a89b5ab056e4adc270919a57. DR EuropePMC; PMC3700308; 23616651. DR EuropePMC; PMC3735072; 23887919. DR EuropePMC; PMC5861215; 29593700. XX FH Key Location/Qualifiers FH FT source 1..6413 FT /organism="Orchid fleck dichorhavirus" FT /segment="RNA 1" FT /isolate="So" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:152177" FT misc_RNA 1..158 FT /note="leader RNA" FT mRNA 163..1651 FT /gene="N" FT CDS 228..1580 FT /codon_start=1 FT /transl_table=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q1MWA2" FT /db_xref="InterPro:IPR004902" FT /db_xref="UniProtKB/TrEMBL:Q1MWA2" FT /protein_id="BAE93579.1" FT /translation="MANPSEIDYMTPLSAYEGVPAEYQEATSSPTPKEYTRDAAKAIPI FT CILPAPPGNEVEVAEAFREATQGTETVLSKLQLAQIMSLGFMIQMSGDPEALMQGVAEG FT SFLETMTMPDIKTRQDSRITAAIAAMALDPTEEGPDDLEDRSQQADAESAMSKARAMVY FT ICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCD FT DLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRYFTLLTPG FT QLLTWLHDNQVSRPLSVIADINTRYDVSNGSDRFWRYSRGLDPGFFIALQQSKCVTLIA FT RMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSGSSANAGP FT VSRKLYNQGRGIPTRRGLFTPPSARPAPVVNVHVPAASSSLTGALDAMNSD" FT mRNA 1656..2592 FT /note="gene 2" FT CDS 1728..2441 FT /codon_start=1 FT /transl_table=1 FT /product="ORF2 protein" FT /note="gene 2" FT /db_xref="UniProtKB/TrEMBL:Q1MWA1" FT /protein_id="BAE93580.1" FT /translation="MFTTKVNMYPEVPSSSQVSDDIDNDTHVDEVAAFVRKWSAAGLSP FT PVTLAKNLRAWVASNTNPGNPLVLDDRMLSLTTMIWNTAAEHYTMIGKSQVNRMSALID FT QLGEISGRKPQQGPSFDMPPPPPKRKHPDSLDTNPILGLIGQDWDEKKDKQWREKPADK FT KHLVLNWVLHEYLGVLTKPVTIKWITDNPSSLELGAVSAYALKHQASLSDCDKEALRAL FT VVQTVKNTPKRPCLD" FT mRNA 2597..3772 FT /note="gene 3" FT CDS 2682..3689 FT /codon_start=1 FT /transl_table=1 FT /product="ORF3 protein" FT /note="gene 3" FT /db_xref="UniProtKB/TrEMBL:Q1MWA0" FT /protein_id="BAE93581.1" FT /translation="MSTLPVSTLHRSNARDEVRETASRRMAHGSDSNVTDFNKNLQTAE FT AWQKRLIHKTSIKVTGSEGEGRITMVRKPILFDIMNSLNSILPTSTKPTWIMGMAIKWV FT PTCDLSTTGTIKVSIQNKAVNNPVLRDHTVVSMTQRVTTPFEVQYTSSSKLANRTGTRG FT NPWMYTYCIEGMDDAPIDMEVGDIVVMPMIRSDDTTTQWYEGVKCNVYGGYFPLNIPVV FT TYCAPGPRFKTNMNEIKSNIEMLRRYLNVQGFTDIDEDLVFKMIQCCDGETAGSIMKGI FT RSSVWAPLAKTDRDYVVIKEMLHDCRVGRVLSYITLSEVEGLSTMGGDKSHSYR" FT mRNA 3777..4544 FT /note="gene 4" FT CDS 3830..4381 FT /codon_start=1 FT /transl_table=1 FT /product="ORF4 protein" FT /note="gene 4" FT /db_xref="UniProtKB/TrEMBL:Q1MW99" FT /protein_id="BAE93582.1" FT /translation="MSKQINMCTVMSFRSLITVIGPRSVDLGAGFKEAVLRAITSLKVK FT AKDPKGAEIDGPWQELLVEIATMTKSAFTGPTIKKDLEQGNVYRYAMTVGGMLSTSHNT FT NGRLMTVRTGPLYDTDHYHVSGEVDIDKMDGFKATITLSVATVKRERQQCEAGIGEYHV FT LPIKGKNPPRSASNTAGPSG" FT mRNA 4549..6265 FT /gene="G" FT CDS 4580..6208 FT /codon_start=1 FT /transl_table=1 FT /gene="G" FT /product="glycoprotein" FT /db_xref="GOA:Q1MW98" FT /db_xref="UniProtKB/TrEMBL:Q1MW98" FT /protein_id="BAE93583.1" FT /translation="MSTFCSLTVLMFLLISGFEALSLVPKTVCEKEVGLHVDEWLHSCL FT GACKSSDNDLDMTPHMLMEPTLEYFKAFGYFIHVSTLTKSSHTFLLGGCHITSQETPSD FT SQELPTNMAENILRHGGPEGEIFMTKEPQCSLWSDNYVKGMLVKYHRVILTVSHTKSGI FT TVLYEQEGVIGHGKVGKTTSSSGTLVWDVRAQYPKCNYRPTGVLSCKREESYIRCRGMS FT EEKISSITEDCGVIILTTDTRNIYGYHKHDGALTTTQTDDNQIGMVKKIIEIENLMCHH FT LCESSSEEGGVTHHEYLVSTPIGPWLAVSTESHRTMFMCTDESAVSLVVPVVLCGNGPL FT VKVRVNEREQWWNISSPYVGMGTHCVPGLSTGLSTVDGVINTWLGQVTIVNGSFTFKRD FT FINKNFHGAFRPSQFSWSHKTGNDLEHIIDALNTQEKVLSHSHVIESHSVGAGENAVHS FT FIGMFTTVFEWIQSLIPNVKGWIIKIFLWALLAALVILLLWILWKVLWLFIKSVFLRRT FT IQAVPTSENSDTSLNRAIHNWAKMD" FT misc_RNA 6266..6413 FT /note="trailer RNA" XX SQ Sequence 6413 BP; 1850 A; 1476 C; 1567 G; 1520 T; 0 other; acacaggata acccgctatt ggtcttctag tgcaagtggc agaaatgacc gcttatacag 60 atcccctaag tttggatgct gagctagcgc ggtagtgtat tggtgagtcc ttctccctta 120 gctacggtcc cagccctaaa tacatgatgt aaacaaaaca acaagtggat aaaaattgca 180 ttgattgaac aaaattgtac taatatttct ctctctacgt aggaaacatg gctaacccaa 240 gtgagattga ttacatgact cccctctctg catacgaggg agttcctgct gaataccaag 300 aagcaacaag ctccccaaca ccgaaggaat acaccagaga tgcagccaaa gcaatcccaa 360 tatgcatcct ccctgccccg ccaggcaatg aggttgaggt ggctgaagcc ttcagagagg 420 caacacaggg cactgaaacg gtcctgtcaa agttgcaact ggcacaaata atgtctctgg 480 gatttatgat ccagatgtcg ggagatcctg aggcattgat gcagggagtg gcagaggggt 540 cattcctgga gaccatgacc atgccggaca ttaagacgag gcaagacagc aggatcacag 600 cagccatagc agccatggca ttggacccaa cagaggaggg gccagatgac ctggaggaca 660 gatctcagca ggcagatgcg gagagtgcga tgtccaaggc cagagcaatg gtgtacatat 720 gcttaagcct catgagactg gctgtgaagc cggctgagtc atttatgaag ggtgttcatc 780 agatcaaaca ggcatattca gtcctggtag gagagcattc tgaattcctg ttcaattact 840 cctattcaga aggaatgtgc aggaatatag ccgacatgtt caaccaatgt gatgatctca 900 aagcaactct ttgccatcac tgcgccatag cagatgagac gcaccacacc aataggaaga 960 ggcacggact tctcagattc ctaatccttc aacatgtgga tcttacgggg atgatcccat 1020 atggaatgta cattgacatg cgaaggtact tcaccctctt aacacccggc cagttgctaa 1080 catggcttca tgacaaccag gtatctaggc ctctcagtgt gattgcggac ataaacacca 1140 ggtatgatgt ttctaacggg tcagatcggt tctggaggta ctcaaggggt ctagacccag 1200 gattctttat agctttacaa cagtcaaaat gtgtcactct gatagccagg atggcacata 1260 tactggtgaa gggaggagcc gtcgctgtca atgaatactc cgatcctcga aaggcaaagt 1320 cattggagaa caagcctggg ctggcagcgg aggcagacaa gttcgccact gagttcgtgg 1380 aggcatacaa cggcctatca ggatcaagtg caaacgccgg ccctgtgtcc cgcaaactct 1440 acaaccaggg cagaggcatc ccgacccgca ggggcctgtt cacaccccct tccgccagac 1500 ctgcgcccgt tgtgaatgta cacgtccctg ccgcctcgtc ctctctgaca ggggccctgg 1560 atgccatgaa cagtgactga cagccacctc tccatggaag accccatctc tatcataaca 1620 atatgctata tatgcgtgca tttaaataaa acaacaacag cggaacttgt gtttgtttat 1680 cacttcatat atattaacag cttcacatat attctcattc cagggaaatg ttcaccacca 1740 aggtaaatat gtacccagag gtccccagct catcccaagt gtccgacgac atagacaacg 1800 acacacacgt agatgaggtc gcagcatttg tgaggaaatg gtcagctgcc ggactatctc 1860 cccccgtcac ccttgcaaag aacctcagag catgggtagc gagcaacacc aacccaggga 1920 accccttggt gctggacgac aggatgctta gtctcacgac catgatatgg aacacagcag 1980 cggagcatta tactatgatc ggtaaatctc aggtcaatcg tatgtcagcg cttattgacc 2040 agctggggga gatctccggc cgaaaaccgc agcagggtcc ctcattcgac atgccacctc 2100 cccctcctaa gaggaaacac ccggattcac tagacactaa ccctatctta ggcttaatag 2160 gtcaggactg ggacgagaag aaggacaaac agtggaggga gaagccagca gataagaaac 2220 atctagtgct caactgggtg ttacatgaat atttgggagt cctaacaaaa ccggtaacga 2280 tcaagtggat aacagacaat ccgtcgtctc tggagttggg agcagtttca gcatacgccc 2340 tgaaacatca ggccagcttg tccgactgtg acaaagaggc cctcagagca cttgtggttc 2400 aaacagtgaa gaacaccccc aaaaggccat gcctggacta ggtgatattc tatcagcttt 2460 atcatatata tgtttctcat tgtctgtcat gcatatgata atagaaatgc tcaatagtga 2520 ctcaccggac tccataatat atgtactagg cattatgcag tacgtcgttg taattcatgc 2580 atttaaataa aacatcaact tatgtcatta actgttatca tattttctat aatcataata 2640 tatatacttg ttcttgtgtc aaccatcctg caggagctaa gatgtccaca ctgccagtgt 2700 ctactcttca caggtccaac gctagggacg aggtcaggga gacggcaagt cgtaggatgg 2760 cccacgggtc cgacagcaat gtgacggact tcaacaaaaa tctgcaaact gctgaggctt 2820 ggcagaaacg cctaatacac aaaacgtcca tcaaggtgac tgggtcggaa ggtgagggga 2880 ggatcaccat ggtgagaaag cccatactgt ttgacatcat gaacagtcta aacagcatac 2940 ttcccacatc gacaaagcca acatggatca tggggatggc catcaagtgg gttccgacat 3000 gtgacctgtc cacaacaggg accatcaagg tatcaatcca gaataaggct gtcaacaatc 3060 ctgttttaag ggatcacact gttgtctcca tgacccaaag agtcacaacc ccatttgagg 3120 tccaatacac atcatcctcc aagctagcca accggacagg cacgaggggg aatccctgga 3180 tgtatacata ttgcatagag ggaatggatg acgccccgat agacatggag gtgggggata 3240 ttgttgttat gcctatgatt aggtccgatg acaccactac acagtggtat gagggtgtga 3300 agtgcaatgt gtatggaggt tacttccctc tgaatatacc ggtggtcacc tactgtgcac 3360 ccggacctag gttcaagacc aatatgaatg agataaaatc aaacatagag atgctcagga 3420 ggtatctcaa cgtccaggga tttaccgata tagatgaaga tctggtcttc aaaatgatac 3480 agtgttgcga cggggagact gcaggatcta taatgaaggg gataagatcc tcagtgtggg 3540 cccctttggc caagactgac agggattatg ttgtaattaa ggagatgctt catgactgtc 3600 gggtaggcag agtactgagc tacatcaccc tcagcgaggt agagggtctc agcaccatgg 3660 gaggtgacaa aagccacagc tatcgttaat tgttactcgg gctaaggacc ctgacggaga 3720 atgctgcctt cccaataagc atatctactt atctaccgta atttaaataa aacaacaatc 3780 ttcgaatcat tgatcattta tatatcagat ctaacgattg tcttttatca tgtctaagca 3840 gatcaatatg tgcactgtga tgtccttcag atcactcatc actgtgatag gacccaggtc 3900 agtggatctt ggagccggat tcaaggaggc ggtgctgcga gcaatcactt cactcaaggt 3960 caaggccaag gacccgaaag gggccgagat agatggcccc tggcaagagc tactggtgga 4020 gattgccacc atgaccaaat cagcattcac cggcccgacc atcaagaaag atctagagca 4080 ggggaatgtc taccgatatg cgatgacagt gggcggcatg ttgagcacat cacacaatac 4140 taatggaaga ttgatgactg tcaggactgg acctctatat gatacagacc actatcatgt 4200 gtctggggag gttgatattg ataaaatgga tggtttcaaa gcaacgataa cactgtctgt 4260 ggccactgtc aaaagagaac gtcaacagtg cgaggcaggc atcggggaat accatgtttt 4320 accgatcaag ggcaaaaatc ccccacgatc cgccagcaac accgcgggac ccagtggtta 4380 gagccatcaa cagctcaggg cctgctctcc ctcctatcag gcgtggatga ttacttaagg 4440 aggaagaagt ctcgactatc ttatgtttta aaggacggtg aatgaaacat ataaccatat 4500 gcatatctta atgatatgcc ctatataatt tgatttaaat aaaacaataa tgatagtaca 4560 aacgaaacag cccggcacga tgtcaacctt ctgctcttta accgtattaa tgtttcttct 4620 tatctcaggt tttgaggctt tgtccctggt cccaaagaca gtttgtgaaa aagaggtggg 4680 gctacatgtg gatgaatggc tccattcatg tttgggggcc tgcaagagca gcgataacga 4740 ccttgatatg acaccccaca tgttgatgga gcccacatta gagtacttta aggccttcgg 4800 gtacttcata catgtatcaa ccctcaccaa gtcgtcacat accttcctac tcggtgggtg 4860 tcacatcacc tcacaggaga cccccagcga ttctcaagag ctccccacta atatggctga 4920 gaatatattg aggcatggcg gccctgaggg agagatattt atgacaaaag agccccaatg 4980 cagcctctgg agtgacaatt atgtgaaagg catgcttgtg aagtatcaca gggtgatttt 5040 gactgtctca cacaccaaga gcgggataac ggttctttac gagcaggagg gagtgatagg 5100 ccatggcaag gtcggcaaaa ccacttcatc atcaggaacc cttgtgtggg acgtgagagc 5160 acaatacccg aagtgcaact atcgccctac aggggttctt agctgtaaga gagaagaatc 5220 atacatacgt tgcagaggta tgtcagagga gaaaatttca tccatcacgg aggactgtgg 5280 agtcatcata ttaacgacag acacaaggaa catatatgga taccataaac atgatggagc 5340 attgactacc actcagacgg atgacaatca gataggtatg gtgaagaaga tcatcgagat 5400 agagaatctc atgtgtcatc atctatgtga gtcctcatct gaggaagggg gagtgacaca 5460 ccatgaatat ttggtctcca caccgatagg gccgtggcta gccgtctcta cggagtccca 5520 tcgcaccatg tttatgtgta cggatgagag tgcagtgtca ttggtggttc cagtggtatt 5580 gtgtggcaat gggcccttgg tgaaagtaag ggttaatgag agggagcaat ggtggaacat 5640 atcctctcca tatgttggta tggggactca ttgtgtcccg ggcctgtcta ctggattatc 5700 cactgttgat ggtgtgataa acacatggtt gggacaagtc accatagtga acggatcttt 5760 cactttcaag cgtgatttta tcaataagaa ctttcacggg gctttcaggc caagccagtt 5820 tagctggtct cacaagacag gcaatgatct tgaacacatc atagatgctc ttaacacaca 5880 ggagaaagtc ctaagccact ctcatgtgat agaatcacac agtgtggggg ccggggagaa 5940 tgctgtgcac tcgttcatcg gtatgttcac gactgtgttc gagtggatac aaagcttgat 6000 cccaaatgtc aaagggtgga taatcaagat cttcctgtgg gcactgttgg cagccctggt 6060 aatcctgttg ctctggatat tgtggaaggt attatggttg ttcatcaaat ctgtattcct 6120 aaggcggacc attcaggcag tcccaacatc ggagaactca gacacatcgc tgaatcgggc 6180 catccacaac tgggccaaga tggattaaca aggtcagtta gggacttttt atatatatac 6240 atatagctga taaatttaaa taaaactatc tcttgggggc cttttcctag ttagggatgt 6300 agggtaaagg accaatagag tcgcataaga gatcgtggcg ttcgtcaaca tcatcaacgt 6360 tggtcgatgc ggaatatgtt gactatttac aacagttact catggctctg tgt 6413 //