ID AB236325; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC AB236325; XX DT 21-MAR-2007 (Rel. 91, Created) DT 03-JUN-2010 (Rel. 105, Last updated, Version 5) XX DE Honeysuckle yellow vein virus-[Japan:Masuda:2003] DNA, complete genome. XX KW . XX OS Honeysuckle yellow vein virus-[Japan:Masuda:2003] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RA Ueda S.; RT ; RL Submitted (23-SEP-2005) to the INSDC. RL Contact:Shigenori Ueda National Agricultural Institute for Kyushu Okinawa RL Region; 1823 Mii, Kurume, Fukuoka 839-8503, Japan XX RN [2] RX DOI; 10.1007/s00705-007-0011-8. RX PUBMED; 18175045. RA Ueda S., Onuki M., Hanada K., Takanami Y.; RT "Unique grouping of the Far East Asian begomovirus complex based on RT sequence analyses of the DNA-A genome and associated DNAbeta satellite RT molecules isolated from tomato, honeysuckle and Eupatorium plants in RT Japan"; RL Arch. Virol. 153(3):417-426(2008). XX DR MD5; 8e82cbeb53aebfbcf7182e193c323b26. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Honeysuckle yellow vein FT virus-[Japan:Masuda:2003]" FT /isolate="Msd" FT /mol_type="genomic DNA" FT /country="Japan:Shimane, Masuda" FT /isolation_source="tomato" FT /collection_date="2003" FT /note="originally submitted as 'Tobacco leaf curl Japan FT virus-[Masuda]'" FT /db_xref="taxon:435489" FT CDS 138..488 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:A4F1V9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4F1V9" FT /protein_id="BAF49376.1" FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYSPDTVGYDLIRDL FT IGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSKAHV FT SEAQDVQNVQKP" FT CDS 298..1071 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A4F1W0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4F1W0" FT /protein_id="BAF49377.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSQSANRASVPIALATNKKRSW FT AQRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEKKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAVIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1068..1472) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:A4F1W1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4F1W1" FT /protein_id="BAF49378.1" FT /translation="MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPFNMDQDI FT ITLQIQFNHNLRNQLDIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYDVLEGTEYVQQFTDIKFKLY" FT CDS complement(1213..1620) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:A4F1W2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4F1W2" FT /protein_id="BAF49379.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGKEWRVYLDSAQSPIFQNHDTRSTAIQHGSGYNNFTDTIQPQ FT PQESTGHTQVLPLFQDLDSLTSSDFAFLEGI" FT CDS complement(1520..2611) FT /codon_start=1 FT /transl_table=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:A4F1W3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4F1W3" FT /protein_id="BAF49380.1" FT /translation="MAPPKRFKINSKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKAYM FT EKDGDVIDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFAPPLEEFVSPFSSSSFDQVPDELEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLSPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEEKNAALKAWAIKNATFVTLYGP FT LYSGTHQGATQIREEESTSPEEN" FT CDS complement(2161..2454) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4F1W4" FT /protein_id="BAF49381.1" FT /translation="MGALISTSSSNSKENTNAQINDSSISYPHLGQHISIQTFRELRAH FT QMSRPTWRKTETSLILEFSKSMEDQLEEVASLPTTHMPRQSIQDLSHRPCLY" XX SQ Sequence 2764 BP; 735 A; 567 C; 630 G; 832 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg tcccccctct gtcggccaat gaatatcgtg 60 cattgaatgt tagataagtg gaaagtgaca tgtgcttttg tctttatata cgtcagccct 120 aattttaagg gtgtaagatg tgggatcctt tagttaacga tttccctgaa accgttcacg 180 gttttaggtg tatgttagcg gttaagtatc tcttacttgt tgaatctacg tattctccgg 240 ataccgttgg ttacgatcta atacgcgatc ttatcggggt tgttcgtgcc aagaactatg 300 tcgaagcgtc ctgcagatat aggaattttc acacccgtct ccaaggtacg gcgccgtctg 360 aacttcgaca gccagtctgc caaccgtgcg agtgtcccca ttgccctcgc cacaaacaaa 420 aagagatcat gggctcaaag gcccatgtat cggaagccca ggatgtacag aatgtacaga 480 agccctgatg tgcctagggg gtgtgaaggc ccttgtaagg tccagtcgta tgagaagaaa 540 aatgatgtag gtcattctgg cactttgctt tgtgtctctg atattacccg tggcaacggg 600 ctcactcatc gtgttgggaa gagattttgt ataaagtccg tttatattat tggtaaaata 660 tggatggatg aaaatattaa gacgaagaat cacacgaaca acgtgttatt ctggttagtt 720 agagatagac gtcccggttc aacgccttat ggctttcagg aggcattcaa tatgtttgag 780 aatgaaccca gcacggctac tgtcaaacaa gaattaagag atcgcttgca agtcttacat 840 aggtttagtg caactgttac tggtggacaa tatgcatcta aagaacaagc cgtcatcaag 900 aggttctgga agttgaatca tcatgtgact tacaatcatc aggagcaagc taaatatgag 960 aatcatactg aaaatgcctt gttattgtat atggcctgta ctcatgccag taatccagtg 1020 tatgctacat taaaaatcag agtgtatttc tacgattcag tacaaaatta ataaagcttg 1080 aattttatat cagtaaattg ttgtacatac tcagttccct ctaatacatc atacaataca 1140 tgatcaactg ccctaattac attgttaatt gaaattacac ccaaattatc taagtacttc 1200 aacacttgtg tcctaaatac cctcaagaaa tgcaaagtct gaggatgtaa gcgagtccaa 1260 atcttgaaag agaggaagca cttgtgtatg tccagttgat tcctgaggtt gtggttgaat 1320 tgtatctgta aagttattat atcctgatcc atgttgaatg gccgttgagc gtgtgtcgtg 1380 attttgaaat ataggggatt gggcactgtc caggtatacg cgccattcct tgcctgagct 1440 gcagtgatgg tgtcccctgt gcgtgaatcc atgatttgca caccctaatg cgacgtaaat 1500 agaacacccg cagttcagat caattctcct ccggcgaggt gctctcctct tctctgatct 1560 gtgtcgcacc ttgatgggta cctgagtaga gtgggccgta gagggtgacg aaggttgcat 1620 ttttaattgc ccaggctttt agggcagcat tcttttcctc gtctaaatac tcggtgtatg 1680 atgacgttgg gcctggattg cagaggaaga ttgttgggat accgccttta atttgaattg 1740 gtttcccgta cttggtgttg ctttgccagt ccctttgggc ccccatgaac tctttaaagt 1800 gctttagata gtggggatcc acgtcatcaa tgacgttgta ccacgcctca ttactgtaaa 1860 ccttggggct taagtcaaga tggccgcaaa ggtagttatg acgtggactc agagacctgg 1920 cccacatagt cttccctgtc ctgctatccc cttctatcac aatactcatg ggcctccacg 1980 gccgcgcagc ggaatccctg acgttctcgg cagcccattc ctcaagttca tctggaactt 2040 gatcaaagga agaagaagaa aaaggagaaa caaattcctc caacggagga gcaaaaatcc 2100 tatctaaatt actatttaaa ttatgaaatt gtaaaacaaa atctttggga gctttctccc 2160 tcaatataga caaggccgat gacttagatc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg gcaacctcct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgacgtctcc gtctttctcc atgtaggcct tgacatctga tgagctctta gctccctgaa 2340 tgtttggatg gaaatgtgct gacctagatg gggatacgag atcgaagaat cgttgatttg 2400 tgcattggta ttttccttcg aattggatga ggacgtggag atgagggctc ccatcttcgt 2460 gtagttctct gcagattcta atgaataatt tatttgttgg tgtttctagg gcttgaatct 2520 gggaaagggc ttcttctttg gttagagagc agtgtgggta tgtgaggaaa taatttttgc 2580 tatttatttt aaaacgtttc ggtggtgcca tatttacaaa tatgcccttg taccccgatt 2640 cggagagaaa acttctttgc tgtgaatcgg tgtaatgggg tacaatatat actcctcctt 2700 ctttttaatt ttgaatttca aaattcaaaa ttcaaattgg taaagcggcc atccgtataa 2760 tatt 2764 //