ID AB236323; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC AB236323; XX DT 21-MAR-2007 (Rel. 91, Created) DT 03-JUN-2010 (Rel. 105, Last updated, Version 5) XX DE Honeysuckle yellow vein mosaic virus-[Japan:Miyazaki:2001] DNA, complete DE genome. XX KW . XX OS Honeysuckle yellow vein mosaic virus-[Japan:Miyazaki:2001] OC Viruses; Geminiviridae; Begomovirus; Tomato leaf curl Japan virus. XX RN [1] RP 1-2759 RA Ueda S.; RT ; RL Submitted (23-SEP-2005) to the INSDC. RL Contact:Shigenori Ueda National Agricultural Institute for Kyushu Okinawa RL Region; 1823 Mii, Kurume, Fukuoka 839-8503, Japan XX RN [2] RX DOI; 10.1007/s00705-007-0011-8. RX PUBMED; 18175045. RA Ueda S., Onuki M., Hanada K., Takanami Y.; RT "Unique grouping of the Far East Asian begomovirus complex based on RT sequence analyses of the DNA-A genome and associated DNAbeta satellite RT molecules isolated from tomato, honeysuckle and Eupatorium plants in RT Japan"; RL Arch. Virol. 153(3):417-426(2008). XX DR MD5; b413d008d2f684361d224486498ba223. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Honeysuckle yellow vein mosaic FT virus-[Japan:Miyazaki:2001]" FT /isolate="Myz" FT /mol_type="genomic DNA" FT /country="Japan:Miyazaki" FT /isolation_source="tomato" FT /collection_date="2001" FT /note="originally submitted as 'Tobacco leaf curl Japan FT virus-[Miyazaki]'" FT /db_xref="taxon:435487" FT CDS 136..486 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:A4F1V2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4F1V2" FT /protein_id="BAF49369.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTIGYDLIRDL FT VGVVRAKNYVEASCRYRNFHSRLQSTTPSELRQPVAQPCECPHCPRHKQKEIMGSEAHV FT SEAQDVQNVQKS" FT CDS 296..1069 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A4F1V3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4F1V3" FT /protein_id="BAF49370.1" FT /translation="MSKRPADIGIFTPVSRARRRLNFDSPLLSRASAPIALVTNKKRSW FT AQRPMYRKPKMYRMYRSPDIPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLNH FT RVGKRFGIKSVYIMGKIWMDENIKLKNHTNNVLFWLVRDRRPVTTPYAFQEAFNMFEME FT PSTATIKQDLRDRLQVLHKFSATVTGGQYASREQALIKRFWKLNHHVTYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSEQN" FT CDS complement(1066..1470) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:A4F1V4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4F1V4" FT /protein_id="BAF49371.1" FT /translation="MDSRTGVTITAAQAQSGAYTWTVPNPLYFKITNHAQRPFNMNQDI FT ITVQIQFNHNLRSQLDLHKCFLTFKIWTLSHHQNSHFLNLFREHVLMYLDNLGVISINN FT VIRAVEYVLYDVLEGTEFVQQFTDIKFKLY" FT CDS complement(1211..1618) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:A4F1V5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4F1V5" FT /protein_id="BAF49372.1" FT /translation="MQPSSPSTAHSTQVPIKVQHKIGKKRQPRRRRIDLNCGCSIYVSL FT GCANYGFTHRGHHHCSSGTEWRVYLDSAKSPIFQNHESRPTAIQHESGHNHSTDTIQPQ FT PPISAGFTQVLPDFQDLDSLTSSELAFLEFI" FT CDS complement(1518..2609) FT /codon_start=1 FT /transl_table=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:A4F1V6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4F1V6" FT /protein_id="BAF49373.1" FT /translation="MPTPNRFKINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYTCRNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDYILQFH FT NLNSNLDRIFAPLLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLNEEKNASLKHWAIKNATFVTLYGP FT LYSGTHQSPAQDREEETTPQEED" FT CDS complement(2159..2581) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4F1V7" FT /protein_id="BAF49374.1" FT /translation="MPRIIFSHTHTALLQKKRLSPKYKPYKPQLINYSSEFVVNYTKMG FT ALISTSSSNSKENIHAEINDSSISYPQLGQHISIRTFRELRARQMSRPTWKKTGTSLIL FT EFSKSMEDQLEEVASLPTTHMPRQSTQGPSHRPCLY" XX SQ Sequence 2759 BP; 732 A; 557 C; 636 G; 834 T; 0 other; accggatggg cgcccgaaat ttcgtattgg gccccccttg tcggccaatg atgttcgtgc 60 cttgaacgct agataagtgg atagtgacat cacttttgtc tttatatacg tcagccctaa 120 ttttaaaggt ataacatgtg ggatccttta cttaacgatt tccctgaaac cgttcacggt 180 ttcaggtgta tgctagcggt taagtacctt ctactcgttg aagctaccta ctctccggat 240 actataggtt acgatctgat tcgtgatctt gtgggtgttg ttcgtgccaa gaactatgtc 300 gaagcgtcct gcagatatag gaattttcac tcccgtctcc agagcacgac gccgtctgaa 360 cttcgacagc ccgttgctca gccgtgcgag tgcccccatt gccctcgtca caaacaaaaa 420 gagatcatgg gctcagaggc ccatgtatcg gaagcccaag atgtacagaa tgtacagaag 480 tcctgatatc cccaaggggt gtgaaggccc gtgtaaggtc cagtctttcg agaagaaaga 540 cgatgttggt cattctggta aaatgctctg tatttctgat atcacccgtg gcaacggact 600 taatcaccgt gttgggaaga gatttggtat aaaatctgtt tacattatgg gaaagatctg 660 gatggatgag aatattaagc ttaaaaatca cactaacaac gttttatttt ggttagttag 720 agatagacgc cctgttacta ccccttatgc attccaagag gcatttaata tgtttgagat 780 ggaacccagt acggctacta tcaagcagga tttgagagat cggttgcagg tcttacacaa 840 gttcagtgct actgtcactg gtggacagta tgcgtccagg gagcaagctc ttatcaagag 900 attctggaag ttgaatcatc atgtcactta caatcatcaa gaagctgcta aatatgagaa 960 tcacactgaa aatgctttgt tattgtatat ggcttgcact catgccagta atccagtgta 1020 tgcaacatta aaaattagag tgtatttcta tgattcagaa cagaattaat aaagtttgaa 1080 ttttatatca gtaaattgtt gaacaaactc cgttccttct aatacatcat acaatacata 1140 ttcaactgcc cttattacat tgttaattga aataacaccc aagttatcta aatacatcaa 1200 cacatgttcc ctaaataaat tcaagaaatg cgagttctga tgatgtgaga gagtccaaat 1260 cttgaaagtc aggaagcact tgtgtaaatc cagctgagat cggaggttgt ggttgaattg 1320 tatctgtact gtgattatgt cctgattcat gttgaatggc cgttgggcgt gattcgtgat 1380 tttgaaatat aggggatttg gcactgtcca agtatacgcg ccactctgtg cctgagctgc 1440 agtgatggtg acccctgtgc gtgaatccat aatttgcaca ccctaagcta acgtatatag 1500 aacacccgca gtttagatca atcctcctcc tgcggggttg tctcttcttc cctatcttgt 1560 gctggacttt gatgggtacc tgagtagagt gggccgtaga gggtgacgaa ggttgcattt 1620 ttaattgccc agtgtttcaa agatgcattc ttctcctcgt ttaaatactc agtgtatgat 1680 gacgttgggc ctggattgca gaggaagatt gttgggatac cacctttaat ttgaattggt 1740 ttcccgtact tggtgttgct ttgccagtct ctctgggccc ccatgaattc tttaaagtgt 1800 tttaggtagt ggggatccac gtcatcaatg acgttgtacc aggcctcgtt gctgtaaacc 1860 ttggggctta agtcaaggtg gccgcaaagg tagttatgac gtggatgtag agatctggcc 1920 cacatagtct tccctgtcct gctatcccct tcaatcacaa tactcatggg cctccacggc 1980 cgcgcagcgg aatccctgac gttctcggca gcccattctt caagttgctc tggaacttga 2040 tcaaaggaag aagataaaaa aggagaaaca aattcctcca acagaggagc aaaaatccta 2100 tctaaattac tatttaaatt atgaaattgt aaaatataat ctttgggagc tttctccctt 2160 aatatagaca aggccgatga cttggaccct gagttgattg cctcggcata tgcgtcgttg 2220 gcagactggc aacctcctct agctgatctt ccatcgactt ggaaaactcc aaaatcaagg 2280 atgtccccgt ctttttccat gtaggtcttg acatctgacg agctcttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctagttggg gatacgagat cgaagaatcg ttgatttcgg 2400 catgtatatt ttccttcgaa ttggatgagg acgtggagat gagggctccc atcttcgtgt 2460 agttcacgac aaattcggat gaataattta ttagttgggg tttgtagggc ttgtatttgg 2520 gagagagcct cttcttttgt aagagagcag tgtgggtatg tgagaaaata attcttggca 2580 tttattttaa aacgatttgg ggtaggcatg ttgactggtc aatcgggagg ctctcaatct 2640 ttctatgcaa ttgggggcat tgggggctta tttatatggt agcctctaat ggcatatttg 2700 taattttgaa attcaaattc aaaattcaaa ttggtaaagc ggccatcccg tataatatt 2759 //