ID   AB233174; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233174;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: SYN6J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 9d13b431955c0e0391619f05b8e85898.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SYN6J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8P8"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8P8"
FT                   /protein_id="BAF36944.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 493 A; 320 C; 363 G; 351 T; 0 other;
     tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc agttcaccac        60
     caaaacacca acgacatgag caagttctta aagctgaagg gcaaatggaa caaaacgctt       120
     atcacgcgtg atgtgttagt gatttgtgga gttcttggag gtggaatatg gatgatcatc       180
     caacacctgc gtatgaagat ctccgaaccc gtgacccacg aggcaaaagg caagaggcag       240
     agacagaagt tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtctatgga       300
     gaagacgacg tcattgaaca cttctttgga gatgcctaca caaagaaggg aaagagtaaa       360
     ggcagaactc gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggattcgat       420
     cctgaagact tctctgcagt tagattcgta gatccactca caggggcaac gatagatgaa       480
     agtccaatca tggatatagc ccttgtgcag gaacattttg gaaaaatacg gatggattta       540
     cttggagaag acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac       600
     tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca cataccacta       660
     aaggtatgtg accttcatgc aacaattgct ggtttcccgg aacgagaaca cgaactgagg       720
     caaactggaa aagctcagcc catggactta agtgaagtac ccaaagctaa cactgagcta       780
     attccagttg accatgaaag tagctccatg tttagagggt tgcgcgacta caacccaata       840
     tccaataaca tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg       900
     gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa taatggtgaa       960
     cttgtgataa agtcaagaca tggtgagttt gtgattaaaa acacgaccca gctacacttg      1020
     ctaccgattc cggacaggga ccttctgcta atccgactac ctaaagacat tccacccttc      1080
     ccgcaaaaac tgggatttag acaacctgag aggggtgaga ggatctgtat ggtaggttcc      1140
     aactttcaaa caaagagcat tacgagtgta gtttctgaga ctagcacgat aatgccagtg      1200
     gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg tggaagtccg      1260
     atggtgagca caaaggatgg aaagatactt gggctacaca gcctggcaaa tttccaaaat      1320
     tccatcaact actttgctgc cttcccagat gattttgctg aaaagtacct ccacactatt      1380
     gaggcacacg agtgggtcaa gcattggaag tataacacca gtgcaattag ttggggctcc      1440
     ctaaatatac aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac      1500
     ctcgacagca cagcagttta tgcgcaa                                          1527
//