ID   AB233166; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233166;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: OB996J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; aacbffdf3127f10fd6ef9de20ffa8172.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OB996J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8P0"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8P0"
FT                   /protein_id="BAF36936.1"
FT                   /translation="TDGISRHFMSGFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNIRDDKMGREVYGEDNT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNEVRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDNFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 491 A; 339 C; 357 G; 340 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gggtttggag ctcttgaggc agtccaccat        60
     caaaacacca gcgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     attacgcgag atgtgctggt gctttgtgga gtccttggag gtggattgtg gatggttatt       180
     cagcacctgc ggtcaaagat ttccgaacct gtaacccacg aagcgaaagg caagaggcaa       240
     agacagaaac taaagtttcg caatatccga gacgacaaga tgggcagaga agtgtacgga       300
     gaggataata ccatagaaca tttcttcggt gatgcttaca caaagaaagg gaagagcaag       360
     ggtaggacac gtggtctcgg acacaagaat aggaagttca tcaacatgta cgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagccac gttggacgac       480
     aacccgttca cagacatcgc tcttgtgcaa gagcactttg gtaatataag aatggattta       540
     ctcggggagg atgagctgga ctcaaatgag gtacgcatga ataagacaat tcaggcctac       600
     tatatgaaca ataaaacagg caaggctttg aaggtggatc taacaccaca catacctctc       660
     aaggtgtgcg atcttcatgc aaccattgct ggattcccag agcgagagaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata gacgaagtgc caagagctaa taatgaactc       780
     gtcccagtag accacgagag taactccatg ttcagagggt tacgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcataataa aatcacgaca tggtgagttc gtgattaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt ggattacaca gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat aattttgccg agaagtatct tcacaccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tacaacacta gtgccatcag ttggggctct      1440
     ttgaatatac aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cagcagtcta cgcacaa                                          1527
//