ID   AB233164; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233164;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: NKJ.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 789a181413ad3242d66bb2b321881aeb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NKJ"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8N8"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8N8"
FT                   /protein_id="BAF36934.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRTKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDA
FT                   IEHFFGDAYTRKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPMNLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 490 A; 317 C; 365 G; 355 T; 0 other;
     tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc agttcaccac        60
     caaaacacca acgacatgag caagttctta aagctgaagg gcaaatggaa caaaacgctt       120
     atcacgcgtg atgtgttagt gatttgtgga gttcttggag gtggaatatg gatgatcatc       180
     caacacctgc gtacgaagat ctccgaaccc gtgacccacg aggcaaaagg caagaggcag       240
     agacagaagt tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtctacgga       300
     gaagacgacg ccattgaaca cttctttgga gatgcctaca caaggaaggg aaagagtaaa       360
     ggcagaactc gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggattcgat       420
     cctgaagact tctctgcagt tagattcgta gatccactca ctggggcaac gatagatgaa       480
     agtccaatca tggacatagc ccttgtgcag gaacattttg gaaaaatacg gatggattta       540
     cttggagaag acgaactgga acccgatgag ttgcgaatga ataagacaat tcaggcttac       600
     tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca cataccacta       660
     aaggtgtgtg accttcatgc aacaattgct ggtttcccgg aacgagaaca cgaactgagg       720
     caaactggaa aagctcagcc tatgaactta agtgaagtac ctaaagctaa cactgagcta       780
     attccagttg accatgaaag tagctccatg tttagagggt tgcgcgacta caacccaata       840
     tccaataaca tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg       900
     gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa taatggtgaa       960
     ctcgtgataa agtcaagaca tggtgagttt gtgatcaaga acacgactca gctacacttg      1020
     ctaccgattc cggacaggga ccttttgcta atccgactac ctaaagacat tccacccttc      1080
     ccgcaaaaac tgggatttag acaacctgag aggggtgaga ggatttgtat ggtaggttcc      1140
     aactttcaaa caaagagcat tacgagtgta gtttctgaga ctagcacaat aatgccagtg      1200
     gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg tggaagtccg      1260
     atggtgagta caaaggatgg aaaaatactt gggctgcaca gcctggcaaa tttccaaaat      1320
     tccatcaact actttgctgc cttcccagat gattttgctg agaagtacct ctacactatt      1380
     gaggcacatg agtgggtcaa gcattggaag tataacacca gtgcaattag ttggggctcc      1440
     ctaaatatac aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac      1500
     cttgacagca cagcggttta tgcgcaa                                          1527
//