ID   AB233149; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233149;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: MD49J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 6a9abe100cd67508928011f120ee5700.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD49J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8M3"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8M3"
FT                   /protein_id="BAF36919.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVFQHLRSKISEPVTHEAKGKRQRQKLKFRSVRDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDANEVRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 486 A; 341 C; 362 G; 338 T; 0 other;
     accgatggaa tatctcggca ttttatgagt gagtatggag ctcttgaggc agttcaccat        60
     caaaacacca gcgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtgttagt gctttgtgga gtccttggag gtggattgtg gatggttttt       180
     cagcacctgc ggtcaaagat ctccgaaccc gtaacccacg aagcgaaagg caagaggcaa       240
     aggcagaaac taaagtttcg cagcgtccga gacaacaaga tgggcagaga agtgtacgga       300
     gatgatgata ccatagaaca tttcttcggt gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacac gtggtctcgg acacaagaat agaaagttca tcaacatgta tgggttcgat       420
     cctgaagatt tctctgcagt tcgcttcgtg gatccactca caggagctac gttggacgac       480
     aacccgttca cagacatcgc ccttgtgcaa gagcactttg gtaacataag aatggactta       540
     ctcggggagg atgagctgga cgcaaatgag gtacgcatga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatt tgacaccaca catacctctc       660
     aaggtgtgtg atcttcatgc aaccattgct ggattcccag agcgagaaaa cgaactgagg       720
     caaactggaa aggctcagcc cattaacata gacgaagtgc caagagctaa caatgaactc       780
     gtcccagtgg accacgagag taactccatg ttcagagggt tgcgtgatta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttgtatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcataataa aatcacgaca tggtgagttc gtgattaaga acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtgta gtctctgaga ctagtacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt ggactacaca gcctagcaaa cttccaaaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtatct tcataccatc      1380
     gaagcacacg agtgggtcaa gcattggaaa tacaacacta gtgctatcag ttggggctct      1440
     ttgaatatac aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgatagca cggcagtcta cgcacaa                                          1527
//