ID   AB233138; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233138;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: KGD946J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 339b9c7fa6b7308a9e0a64c2fdaf6094.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KGD946J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8L2"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8L2"
FT                   /protein_id="BAF36908.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDISLVQKHFGDIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELAPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 499 A; 339 C; 349 G; 340 T; 0 other;
     accgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc agttcaccat        60
     cagaacacta atgacatgag caaattccta aagctcaagg gcaaatggaa taaaacgttg       120
     atcacacgag acgtgttggt gatctgtgga gtctttggag gtggaatttg gatgataatc       180
     caacacctgc gttcaaaact ttctgaacct gtaacccatg aggcaaaagg gaagaggcag       240
     agacagaaac taaagtttcg caatgcccga gacaacaaaa tgggtagaga ggtatacgga       300
     gacgacgacg tcatagaaca cttctttgga gatgcctaca caaagaaggg aaagagcaaa       360
     ggcagaacac gtggcctcgg ccataagaac aggaagttca tcaatatgta tggatttgat       420
     cctgaagact tctcagcagt cagattcgta gatccactta caggagctac gctagacgat       480
     aatccattca cggacatctc ccttgtgcaa aaacactttg gagatattcg gatggatctg       540
     cttggagaag atgaactgga accagatgag ttgcgaatga acaagacgat tcaggcctac       600
     tacatgaaca ataaaacagg taaagccctg aaggtggatt tgacaccaca cgtaccactc       660
     aaggtatgtg atcttcacgc aaccatcgct ggtttcccgg aacgagaaca cgaactcagg       720
     caaactggca aagctcagcc tatagacata agcgaaatac ctaaggctaa tactgagcta       780
     gccccagttg accatgaaag cagctccatg ttcagagggt tgcgcgacta caacccgata       840
     tctaacaaca tctgtcacct aacaaatgta tcggacggag catcaaactc gttatatggt       900
     gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa taatggcgag       960
     ttagtaatta aatctaggca tggtgagttc gtgattaaaa acacaactca attacatttg      1020
     ctgccaattc cggatcggga tttattgcta atccgactac caaaggacat tccacctttc      1080
     ccgcaaaaac taggctttag acaacctgag aagggtgaga ggatctgtat ggtaggatcc      1140
     aacttccaaa ctaagagcat tactagtgtg gtttctgaga ccagcacgat tatgccagta      1200
     gagaatagcc aattttggaa acattggatt agcactaaag atggccaatg tgggagccca      1260
     atggtgagca caaaggatgg aaagatacta gggctacaca gcctagcaaa tttccaaaac      1320
     tccatcaact actttgctgc cttcccagat gattttgctg agaaatatct ctacaccatc      1380
     gaagcacacg agtgggttaa acactggaag tacaacacca gtgcgattag ttggggctcc      1440
     ttaaacatac aagcctcgca accagcaggc ttgttcaaag tgagcaaact catatcagac      1500
     ctcgacagca cagcagtgta tgcacaa                                          1527
//