ID   AB233126; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233126;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: FD997J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; a76de9b36191227b6218187b63db2faa.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="FD997J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8K0"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8K0"
FT                   /protein_id="BAF36896.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDISLVQKHFGDIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPINIDEVPKANNELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELRIQSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDGFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 493 A; 333 C; 355 G; 346 T; 0 other;
     actgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc agttcaccac        60
     cagaacacca atgacatgag caaattccta aagctcaagg gcaaatggaa taaaacgtta       120
     atcacacgag acgtgttggt gatctgtgga gtttttggag gcggaatctg gatgataatc       180
     caacacctgc gttcaaaact ttctgaacct gtgacccatg aagcaaaagg caagaggcaa       240
     aggcagaaac taaagtttcg caacgcccga gacaacaaga tgggtagaga ggtatacgga       300
     gatgacgacg tcatagaaca cttcttcgga gatgcctata cgaagaaggg aaagagcaaa       360
     ggcagaacac gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggatttgat       420
     cctgaagact tctcagcagt taggttcgtg gatccactta ccggagccac actggacgat       480
     aatccgttta cggacatctc cctcgtgcaa aagcactttg gagacattcg aatggacctg       540
     cttggagaag atgaattgga accagatgag ttgcggatga ataagacaat tcaggcctac       600
     tatatgaaca ataaaacagg taaggctctg aaggtggatt tgacaccaca cgtaccactc       660
     aaggtgtgtg acctccatgc aaccatcgct ggtttcccgg aacgagaaca tgaacttaga       720
     caaactggaa aagctcagcc aatcaatata gacgaagtac ccaaggctaa taatgagcta       780
     attccagttg accatgagag tagctccatg ttcagagggt tgcgcgacta caacccgatt       840
     tctaacaaca tttgtcattt aacaaatgtt tcagacggag catcgaactc gttgtatggt       900
     gttggttttg ggccacttat actaacgaac cgacatcttt tcgaacggaa taatggcgag       960
     cttagaattc aatctagaca tggtgagttt gtgatcaaaa acacaactca attacatctg      1020
     ctaccaattc cggatcggga tttattgcta atccgattac caaaagatat cccacccttt      1080
     ccacagaaat tgggtttcag acagcctgag aagggtgaga ggatctgtat ggtaggatcc      1140
     aacttccaaa ccaagagcat aacgagcgtg gtctccgaga ccagcacgat tatgccagtg      1200
     gagaatagtc aattttggaa acactggatt agcaccaaag atggccagtg tgggagccca      1260
     atggtgagca caaaggatgg aaagatactt ggactacaca gtctagcaaa tttccaaaac      1320
     tccattaact actttgctgc cttcccagat ggttttgctg agaaatatct atacaccatc      1380
     gaagcacacg agtgggttaa acactggaag tacaacacca gtgcaattag ttggggctct      1440
     ttaaacatac aagccgcgca accagcgggt ttgttcaagg tgagcaaact catatcagac      1500
     ctcgacagca cagcagtgta tgcacaa                                          1527
//