ID   AB233123; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233123;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: SB20J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; fb5e4b8c02085abd0339ef772427fe0b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SB20J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8J7"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8J7"
FT                   /protein_id="BAF36893.1"
FT                   /translation="MAAVTFASAITNATINKPASTGMVQFGNFPPVPLRTTTATIVTTP
FT                   VVQPKLYTVQFGSLDPVVVEGKAGSSARVTRQQPSVGIDASLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWETSLKRQSYGIAEHEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQHPIVLKWEPQMSQFSIGGGPAANVIEAEEVRTQWPPHKTPSMKKKMVFKACRMNN
FT                   QGIDMLMRSLIKIFKAKNATIEYTVKKSINVDFVRKERTKFARIQVAHMLGRRAQRDLL
FT                   TGVEENHFIDTLSSYSGNKRTISPGVVCAGWSGIVIRNGVLIQNQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIVHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 342 A; 254 C; 285 G; 205 T; 0 other;
     atggcagcag tcacattcgc atcagcaatc accaacgcca ccatcaacaa gccagcatcc        60
     accggaatgg tacagtttgg gaatttcccg ccagtaccac tacgaaccac caccgctacc       120
     atagtcacca ccccagtggt gcagcctaaa ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagttg tcgagggtaa agcagggtct tctgctaggg taacccgcca gcagcctagc       240
     gttggaatag acgctagcct cagggaagcc gcagctttag aggttgcgaa gcccaaacca       300
     aatgccgtgt taaggatgca cgaggaagcg aacaaagagc gagcgctctt cttggactgg       360
     gagaccagcc tgaaaaggca atcgtatggc atcgctgagc acgagaaagt cgtaatgaca       420
     actcgtggcg tcagcaagat agtgcccagg agttcacggg cgatgaaaca aaagcgcgca       480
     agagagaggc gcagggcaca acatccaatt gtgctgaaat gggagccaca gatgagccag       540
     ttctctatcg gaggaggacc tgccgcaaat gtgattgagg cagaggaggt tcgcacacag       600
     tggccaccac acaaaacacc atcaatgaag aagaagatgg tgtttaaagc gtgcagaatg       660
     aacaaccaag gaatcgacat gctgatgcgt tccttgatta agattttcaa ggcaaagaat       720
     gccaccattg agtacactgt gaaaaagtct atcaatgtag actttgttag aaaggagcga       780
     acaaagttcg ctagaatcca ggtagcacat atgcttggta gaagagcaca acgtgaccta       840
     ttaaccggag tggaagaaaa ccacttcatt gacactctca gtagctactc aggtaacaag       900
     agaaccataa gcccaggagt agtttgtgct ggctggagtg gaatagtcat cagaaatgga       960
     gttctcattc agaaccagag caggagcccg tcacaagcct ttgtgatcag aggagaacat      1020
     gaaggcaaat tgtatgacgc cagggttaaa gtcacgaagg tcatgagtca taaaatcgtg      1080
     cactac                                                                 1086
//