ID   AB233118; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233118;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: OB996J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 2b0af5492baf1364bf224a4e08b87a29.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OB996J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8J2"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8J2"
FT                   /protein_id="BAF36888.1"
FT                   /translation="MAAVTFATAITNTTVSRSASTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWETSLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIIPKWEPKVSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICKMND
FT                   QGVDMLTRSLIKIFKTKSANIEYIGKKSVKVDFIRKGRTKFARIQVAHLLGRRARRDLS
FT                   TGMEEDHFIDILSGYSGNKKTINPGVVCAGWSGIVVRNEILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKITRTMSHKIVHF"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 346 A; 235 C; 296 G; 209 T; 0 other;
     atggcagcag ttacatttgc aaccgcaatc actaacacca ccgtaagcag atcagcatcc        60
     accggaatgg tacagtttgg gaacttccca ccagtgccat tgcgatccac caccgccacc       120
     acagtcgcca ctccagtggc gcagcctaaa ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagtcg tcaagagtgg agcagggtcc tttgctaagg caacacgcca gcagcctaac       240
     gttgaaatag acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagaccg       300
     aatgccgtgt tgaggatgca cgaggaggca aacaaggaga gagcactctt tttggactgg       360
     gagactagtt tgaagagaag ctcgtatgga attgctgaga acgagaaggt tgtaatgaca       420
     actcgtggcg tcagcaagat agtgcccaga agttcaaggg caatgaagca aaagcgcgca       480
     agggagaggc gtagagcgca gcaaccaatt ataccaaagt gggagcctaa agtgagcggg       540
     atttcaatcg gaggagggct ctctgcgagc gcgatcgaag cagaagaggt tcgcacaaag       600
     tggccgcttc acaaaacacc gtcaatgaag aagaggacgg tgcacagaat atgcaagatg       660
     aacgaccaag gagttgacat gttgacacga tccctgatta agattttcaa gactaagagt       720
     gccaacattg agtacatcgg aaagaagtcg gttaaggtcg atttcatcag aaaaggacgg       780
     acgaaatttg caagaattca agtagcacac ttactcggga ggagagcacg gcgcgactta       840
     tcaactggaa tggaagaaga ccatttcatt gacattctca gcgggtactc aggtaacaag       900
     aaaaccataa atccaggagt agtctgtgca ggttggagtg gcatagtcgt tagaaatgaa       960
     attttaaccc agaaacgaag cagaagtcca tcagaggcct ttgtaattag aggtgagcac      1020
     gaaggcaagt tgtacgatgc cagaatcaaa attacgagga caatgagcca caagattgtg      1080
     cacttt                                                                 1086
//