ID   AB233104; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233104;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: MD966J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; a67b6521a7d1f8470c2fa43935026817.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD966J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8H8"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8H8"
FT                   /protein_id="BAF36874.1"
FT                   /translation="MAAVTFATAITNATASKPTPTGMVQFGNFPPVPLRSTTVTTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSNYSGNRKTVNPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 346 A; 238 C; 293 G; 209 T; 0 other;
     atggcagcag ttacattcgc aaccgcaatc actaacgcca ccgcaagcaa accaacaccc        60
     accggaatgg tacagtttgg gaatttccca ccagtgccat tgcgatccac caccgtcacc       120
     acagtcgcca ctccagtggc gcaacctaaa ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagtcg tcaagagtgg agcagggtcc tttgctaagg caacacgcca gcagcctaac       240
     gttgaaatag acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagacca       300
     aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt tttggactgg       360
     gaggctagtt tgaagagaag ctcatatgga attgctgaga acgagaaagt tgtaatgaca       420
     actcgtggcg tcagcaagat agtgcccaga agttcaaggg cgatgaagca aaaacgcgca       480
     agggaaagac gtagagcgca acaaccaatc atactaaagt gggagcctaa attgagcggg       540
     atctcaattg gaggagggct ctccgcaagc gcgatcgaag tggaagaagt ccgcacaaag       600
     tggccgcttc acaagacacc gtcaatgaag aagaagacgg tgcacagaag atgcaagatg       660
     aatgatcagg gaattgacat gttaatgcgt tctttgatta aaatctttaa ggcgaagagt       720
     gcgaacattg agttcattgg aaggaagtcc attaaagtgg atttcgtaaa gaaggagcaa       780
     accaagtttg ccagagtaca agtagtgcat ttgctcggaa agcgagcaca acgcgacctg       840
     ttgactggtg cagaagagaa ccacttcatt gacaccctga gcaactactc aggaaatagg       900
     aaaaccgtaa acccaggagt agtgtgcgct ggctggagtg gcattgttat cagaaacggc       960
     attttgactc agaagcagag cagaagtcct tcgcaagcct ttgtgattcg aggggaacat      1020
     gaagggaagt tgtatgacgc cagagttaag gtcacaaagg tgatgagcca caaaatcata      1080
     cactat                                                                 1086
//