ID   AB233101; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233101;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: MD49J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 2524ccfab78b8757c07731cd12480906.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD49J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8H5"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8H5"
FT                   /protein_id="BAF36871.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSSAKATRQQPNVEIDVSLSEAAALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETNLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSTISIGGGPSANMIEAEEIRTKWPLHKTPSMKRKMVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQSKFARVQVAHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIMHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 347 A; 238 C; 283 G; 218 T; 0 other;
     atggcagcag ttacattcgc atcagctatc accaacgcca tcaccaataa accagcactc        60
     accggaatgg tacagtttgg gaatttccca ccagtgccac tgcgatccac caccgtcacc       120
     acagtcgcca cttcagtggc gcaacctaag ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagtcg tcaagagtgg agcagggtcc tctgctaagg caacacgcca gcagcctaac       240
     gttgaaatag acgttagcct cagtgaagcc gcagctttgg aggttgcgaa acccaaaccg       300
     aatgccgtgt taaggatgca cgaggaaatg aacaaggaga gagcactctt cttagactgg       360
     gaaaccaatt taacaaggcg ctcatatggc attgctgaca acgagaaggt catcatgaca       420
     gctcgtggtg ttagcaaaat agtgcttagg agctcaaggg cgatgaaaca aaagcgcgca       480
     agagaaaggc gcagggcaca acaaccaatt gtgctgaaat gggagcccaa gttgagcaca       540
     atctcaattg gaggaggacc ctccgcaaac atgattgagg cagaagagat tcgcacgaag       600
     tggccgctgc ataaaacacc atcaatgaag aggaagatgg tgcacagaag atgcaagatg       660
     aatgatcaag gaattgacat gttaatgcgt tctttgatca aaatttttaa ggcgaagagt       720
     gcgaacattg agttcattgg aaggaagtcc attaaagtgg atttcgtaaa gaaagagcaa       780
     tcgaagtttg ccagagtaca agtagcacat ttgctcggaa agcgggcaca acgcgacctg       840
     ttgactggtg ctgaagagaa ccacttcatt gacaccctaa gcacctactc aggaaatagg       900
     aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat cagaaacggc       960
     attttgactc agaagcagag cagaagtcct tcgcaagcct ttgtgattcg aggagaacat      1020
     gaagggaagt tgtacgacgc cagagttaag gtcacaaagg tgatgagcca taaaatcatg      1080
     cactat                                                                 1086
//