ID   AB233099; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233099;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: MD45J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; 3ef0e0bb8c39ba4e6a7eb45dbf23db99.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD45J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8H3"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8H3"
FT                   /protein_id="BAF36869.1"
FT                   /translation="MAAVTFATAITNTTASRSTSTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFTKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLRRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEAEEVRTKWPLHKTPSIKRKTVHRRCKMND
FT                   QGIDMLVRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGGD
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 345 A; 229 C; 298 G; 214 T; 0 other;
     atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcag atcaacatcc        60
     accggaatgg tacagtttgg gaacttccca ccagtgccat tgcgatccac caccgccacc       120
     acagtcgcca ctccagtggc gcagcctaaa ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagtcg tcaagagtgg agcagggtcc tttactaagg caacacgcca gcagcctaac       240
     gttgaaatag acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagaccg       300
     aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt tttggactgg       360
     gaggccagtt tgaggagaag ctcgtatgga attgctgaga acgagaaagt cgtaatgaca       420
     actcgtggcg tcagcaagat agtgcccaga agttcaaggg caatgaagca aaagcgcgca       480
     agggagaggc gtagagcgca acaaccaatt atactaaagt gggaacccaa atcgagcgga       540
     atctcaattg gaggagggct ttctgcgagc gcgatcgaag cggaagaagt tcgcacaaag       600
     tggccgttgc ataaaacacc atcaataaag aggaagacgg tgcacagaag atgcaagatg       660
     aatgatcaag gaatcgacat gttagtgcgt tcattgatta aaatctttaa ggcgaagagt       720
     gcgaacattg agttcattgg gaggaagtcc attaaagtgg attttgtaaa gaaagagcaa       780
     acgaagtttg ccagagtgca agtagtgcat ttgctcggaa agcgggcaca acgcgacctg       840
     ttgactggtg cagaagaaaa ccacttcatt gacaccctaa gcacatactc aggaaataag       900
     aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat cagaaacggc       960
     attttgactc agaagcagag tagaagtcct tcgcaagcct ttgtgattcg aggaggagat      1020
     gaagggaagt tgtatgacgc cagggttaag gtcacaaagg tgatgagcca taaaatcata      1080
     cactat                                                                 1086
//