ID   AB233079; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233079;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: KD41J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; af7383651974bdf37401af2b141c9b21.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KD41J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8F3"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8F3"
FT                   /protein_id="BAF36849.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEYIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDILSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 347 A; 232 C; 293 G; 214 T; 0 other;
     atggcagcag ttacattcgc aaccgcaatc actaacacca ccgcaagcaa accagcactc        60
     accggaatgg tacagtttgg gaatttccca ccagtgccat tgcgatccac caccgtcacc       120
     acagtcgcca cttcagtggc gcaacctaaa ctgtacacag tgcagtttgg aagccttgac       180
     ccagtagtcg tcaagagtgg agcagggtcc tttgctaagg caacacgcca gcagcctaac       240
     gttgaaatag acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagacca       300
     aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt tttggactgg       360
     gaagctagtt tgaagagaag ctcacatgga attgctgaga acgagaaagt tgtgatgaca       420
     actcgtggcg tcagcaagat agtgcccaga agttcaaggg cgatgaagca gaagcgcgca       480
     agggaaagac gtagagcgca acaaccaatc atactaaagt gggagcctaa attgagcggg       540
     atctcaattg gaggagggct ctccgcgagc gcgattgaag tggaagaagt ccgcacaaag       600
     tggccgcttc acaagacacc gtcaatgaag aggaagacgg tgcacagaag atgcaagatg       660
     aatgatcaag gaattgacat gttaatgcgt tctttgatta aaatttttaa ggcgaagagt       720
     gcaaacattg agtacattgg aaggaagtcc attaaagtgg atttcgtaaa gaaagagcaa       780
     acgaagtttg ccagagtgca agtagtgcat ttgctcggaa agcgagcaca acgcgacctg       840
     ttgactggtg cagaagagaa ccacttcatt gacatcctaa gcacctactc aggaaatagg       900
     aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat cagaaacggc       960
     attttgactc agaagcagag cagaagtcct tcgcaagcct ttgtgattcg aggagaacat      1020
     gaagggaagt tgtatgacgc cagagttaag gtcacaaaag tgatgagcca caaaatcata      1080
     cactat                                                                 1086
//