ID   AB233078; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233078;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: FD997J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
OC   Patatavirales; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1111/j.1365-294X.2006.03094.x.
RX   PUBMED; 17107475.
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15(14):4437-4457(2006).
XX
DR   MD5; cf134c1fb266c8923bd6f88ed543f8c0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="FD997J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1..>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8F2"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8F2"
FT                   /protein_id="BAF36848.1"
FT                   /translation="MAAVTFASAITNAITNKPASTGMVQFGNFPPVPLRTTVATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGPGSSAKATRQQPSIAPDASLREAAALEVVKPKPNAVL
FT                   RKHEEANKERALFLDWEASLKRQSYGIAENEKVVMTTRGISKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPQLSTLSIGGGPAANVIEAEEVRTKWPLHKTPSMKKKTVFKACRMSN
FT                   QGIDMLVRSLIKIFKAKNATIEYTAKKSIHVDFIRKERTKFARVQVAHLLGKRAQRDLL
FT                   TGVAENHFIDTLSGYSGNKRVISPGVVRAGWSGIIIRNGALNQSQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKTMSHKIVHY"
FT   mat_peptide     1..>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 332 A; 262 C; 290 G; 202 T; 0 other;
     atggcagcag tcacattcgc atcagcaatc accaacgcca tcaccaacaa accagcatcc        60
     accggaatgg tacaatttgg gaatttccca ccagtgccat tgcgaaccac cgtcgctacc       120
     acagtcgcca ccccagtggc gcaacctaaa ctgtacacgg tacagtttgg aagtcttgac       180
     ccagtagtcg ttaagggtgg accagggtcc tctgctaagg caacccgcca gcagcctagc       240
     attgcaccag atgctagcct cagggaagcc gcagctttgg aggttgtaaa acccaagccg       300
     aatgccgtgt tgagaaagca cgaggaggca aacaaagagc gagcgctctt cttggactgg       360
     gaagccagtc tgaaaaggca atcatatggc attgctgaga acgagaaagt cgtgatgaca       420
     actcgtggca tcagtaagat agttcccaga agttcacggg cgatgaagca aaagcgcgca       480
     agggagaggc gcagggcaca acaaccaatt gtgctaaaat gggagccaca actgagcaca       540
     ctctccattg gaggagggcc tgccgcaaat gttattgagg cggaggaagt gcgcacaaag       600
     tggccactac acaaaacacc gtcaatgaag aaaaagacgg tgttcaaagc gtgcagaatg       660
     agcaaccaag gaattgacat gctagtgcgt tccttgatca agatcttcaa ggcgaagaac       720
     gccaccatcg aatacactgc aaagaagtct atccacgtag acttcatcag aaaggagcga       780
     acaaagtttg cccgagttca ggtggcgcat ttacttggta aacgagcaca acgtgacctg       840
     ttgactggag tggcagaaaa ccacttcatt gacactctca gtggttactc aggtaacaag       900
     agagtcataa gcccaggggt agtgcgtgcc ggctggagtg gaataatcat taggaacgga       960
     gctctcaacc agagtcagag taggagtcca tcgcaggctt tcgtgatcag aggcgaacat      1020
     gaaggcaaat tgtatgatgc cagggttaag gtcacgaaga ctatgagcca taagatcgtg      1080
     cattat                                                                 1086
//