ID AB219105; SV 1; linear; genomic RNA; STD; VRL; 6582 BP. XX AC AB219105; XX DT 21-DEC-2005 (Rel. 86, Created) DT 21-DEC-2005 (Rel. 86, Last updated, Version 1) XX DE Nerine virus X genomic RNA, complete genome. XX KW . XX OS Nerine virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6582 RA Fuji S., Shinoda K., Furuya H., Naito H., Fukumoto F.; RT ; RL Submitted (21-JUN-2005) to the INSDC. RL Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource RL Sciences; Shimoshinjo Nakano, Akita, Akita 010-0195, Japan RL (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678) XX RN [2] RX DOI; 10.1007/s00705-005-0620-z. RX PUBMED; 16155730. RA Fuji S., Shinoda K., Furuya H., Naito H., Fukumoto F.; RT "Complete nucleotide sequence of Nerine virus X (NVX-J) isolated from the RT African lily plant (Agapanthus campanulatus) in Japan"; RL Arch. Virol. 151(1):205-208(2006). XX DR MD5; 2b467abd31344e0f7bd0903201b77524. XX FH Key Location/Qualifiers FH FT source 1..6582 FT /organism="Nerine virus X" FT /isolate="J" FT /mol_type="genomic RNA" FT /db_xref="taxon:333348" FT CDS 90..4604 FT /codon_start=1 FT /transl_table=1 FT /product="replicase protein" FT /note="ORF1" FT /db_xref="GOA:Q2V0S0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2V0S0" FT /protein_id="BAE66615.1" FT /translation="MSKVRAALERLNDCSLKAVLQNEAYKEIRPTLREATLINPFAIDD FT AAADSLESLGIITNPYAVKLHTHGAVKAIENQMLSIVGHNLPKRPVTYMFLKKSKLRYL FT RRDPRISDVFQNYEIEPRDVARYPPETVLKRFTVVNTDVAYISDTLHFLRPTFLTALFE FT RSHNLQTLYATMVLPPEALHKLPSLEPNLYQINYSFDGFQYIPGRHGGGAYHHEFKDLQ FT WLRVGKIKGPTTTITCQLLESMGANHLFVFRRGDLLTPRVRTFRCDEHVTLPQIFHPTN FT RNASRPIKHTLAAQLLLYCESIADLKLKDVFAKVRQLVKTNDLPQLQPTEIVHIANYFY FT FVGHLGAVNTYEDVLSMSLFRKVLQPIKTRIIQIWEKLFGERKFEQLMKALNWQTFTLS FT VQVTCGRSYMYGWDNANIRPDTLPDFVEDEHTPETETTERPPNPVIAPAVTGFACSPNP FT SSSSPPPSTHPSTSKSGHKLMYRPKVKNTPTLTQHKSQVSNQDAATHSGNNTPEQAGQN FT SSTSTSANAGPAQTQATHKADKGKATLKEDIPSSSSSGLEAHIIEDYMDTYSRNDAPPL FT TAEVDPFLRVNEPEPVTNSEKPDQQTESSKATCTLETDEPLLNFMSPPDWHIEALNRNA FT PHHEDDAAHTTSTPERAPEQEITEDLQVSPNNDGKPEEPLPWQPWLNILKSVGFKGNET FT QLDKLDQIIMPISDVRHLPQPDFVPGLPHKLFSLLKHIQRLPVQSKISSRRAKCYASDV FT KNGRTGLLTRHQSDEWKETFSTLTEMEAPSTWVSVIHGAGGSGKSQALQEYMRSLKSDQ FT KEITIILPTNELRIDWEGKVPHMNTYAFKTFERALIEPVEDICVFDDYGKLPPGYIEAF FT CMLHVNITCLILTGDSRQSVYHETNAQALIAHLPHAIMQFEPLCRYYLNATHRNPRNLA FT NALGIYSEAPGRTTITMSSRPMTGWPILSPSCAKKTCFGEMGHVAHTYAGCQGLTAPKI FT QMVLDNNTPLCTTEVMYTALSRAVHNIHFINTGANSKEYWTKLDATPYLKTFLETVREK FT VVTEDEPPEPKVREEPVRTHVAPDNENLILEELITELPEKHARELYDNHHGHSNAIQTE FT DPVIQLFQHQQAKDETLLWATIEARIKISSPEANLAEFILKRDIGDILFENYAIAMNVP FT KEPLPFETTLWQACREEVEKTYLAKPVSALINGSLRQSPDFHPDAISLFLKSQWVKKVE FT KLGCLHVKPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIK FT QGWNFKRQAYSNDFTAFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGT FT LAIMRLSGEGPTFDANTECSIAYHHTRFHVPSNTRRFFAGDDSAQDCPAVEKSSFQAIS FT GRMSLTSKPVSYAQKPGKFAEFCGWSITPLGVIKDPLKLYASLELACRTDNKENVAQSY FT ALDAKHAYQLGDALHDILTPEQFVMHQKTIRMLHELKVGNLLK" FT CDS 4637..5326 FT /codon_start=1 FT /transl_table=1 FT /product="triple geneblock protein 1" FT /note="ORF2" FT /db_xref="GOA:Q2V0R9" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q2V0R9" FT /protein_id="BAE66616.1" FT /translation="MENIINKLQTRFTRTSLPISKPIIIHCCAGAGKTTFIRELLEQFP FT EVQAYTHSQHLAAEKTISGRNFHHFSEYQPGYLDVIDEYLAGPIPETCHFCFADPYQYN FT IDALPAHFICNKSYRFGTLTADYLNSLGYQVRSAGGSDSIRFIDLAHWEPEGICITQDS FT DILNLLTRHGISAYHPCETLGLQFNCVDYLVPKLPTPATADANTYLALTRHSSRLNVVS FT DAADSAT" FT CDS 5304..5663 FT /codon_start=1 FT /transl_table=1 FT /product="Triple gene block protein 2" FT /note="ORF 3" FT /db_xref="GOA:Q2V0R8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q2V0R8" FT /protein_id="BAE66617.1" FT /translation="MPLTAPPDYTHILPIAIVSIAVALSLYTITRNTLPHTGDNIHHFP FT HGGRYRDGTKSITYCPPQRNLSPFNSTGYSIIPTALAILLPAAIYLSSKCFNSRTHPHS FT CSHCQPNSATMRGTS" FT CDS 5440..5802 FT /codon_start=1 FT /transl_table=1 FT /product="Triple gene block protein 3" FT /note="ORF 4" FT /db_xref="GOA:Q2V0R7" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q2V0R7" FT /protein_id="BAE66618.1" FT /translation="MEAATGTEPSLSPIARHNAIYHRLTAPVTASSPQHSPSYSQRQFI FT LALSVSIAALILTLAVIASQTPPPCVVHLDGNSAHIENCSNQPELPELVNAASNHVRGL FT IKPELEIEPHCSYGKH" FT CDS 5789..6454 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /note="ORF 5" FT /db_xref="GOA:Q2V0R6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2V0R6" FT /protein_id="BAE66619.1" FT /translation="MANTSASAALPAQSKTDDMTAPPDNKDLEALQYIPESNAVATADQ FT IHAIAALWKSIGVPAAKLGPYAWDLARHCADVQSSSQAKIVGTPPGESKLTRQMLAASI FT KSICTLRQFCMYFAPVVWNMMILTDQPPANWSKLNYRESERFAAFDFFDGVTHTAALHP FT IGGLIRPPSEAERVANAAQKGLHIYKAAQQKNQLTSTAVEFTRAQVGSAPSLTLLPPN" XX SQ Sequence 6582 BP; 1944 A; 1893 C; 1329 G; 1416 T; 0 other; ggaaaaccaa cacaacctaa aaccaaaccc aacaacgcac aacaccttac aaggtcctct 60 agtgttgaga aaactccgac gcccttgcaa tgtcgaaagt gcgtgccgcc ctagaaaggc 120 tcaatgattg ttctctcaaa gcagtgttac aaaacgaagc gtacaaagaa atcagaccca 180 cactgcgcga agctacactc atcaatcctt tcgccatcga tgacgctgct gccgattctc 240 tggaaagctt aggtatcatc actaatccct atgccgtcaa actacacact catggagcag 300 ttaaagccat tgaaaatcaa atgctgtcta tcgttggcca caacctaccc aaaagaccgg 360 taacttatat gttccttaag aagagcaagc tgcgctacct ccgacgggac cctagaatct 420 ccgacgtctt ccaaaactac gagattgagc cacgcgatgt ggcccggtac cctcccgaaa 480 cagtgctcaa gaggttcacc gttgtaaaca cagatgttgc ttacatcagt gacacccttc 540 acttcttaag acccaccttt ttaacggctc tttttgagag gtctcacaac ttgcagacgc 600 tctacgccac catggtatta cccccggaag ctctgcataa actcccctca ctggaaccaa 660 atttgtacca aatcaactac agctttgatg ggttccaata tataccagga cgccatggtg 720 gcggggctta ccaccatgaa tttaaggatc tacaatggtt aagagtggga aagattaaag 780 gacccaccac caccataact tgccaacttc tagaatccat gggtgccaat catctcttcg 840 tattccgacg tggggaccta ctcacccccc gggtacgaac gttcagatgc gatgaacatg 900 taacactacc ccagattttc caccccacta atcgcaatgc gtctaggccc atcaaacaca 960 ctctagcagc tcaactgttg ctatactgtg agagcattgc cgatcttaag cttaaagacg 1020 tcttcgccaa agtgaggcag ttggtgaaga ctaatgattt gccccagctt cagcctactg 1080 aaatagtgca catagcaaac tatttctatt tcgtaggcca tctcggcgca gtaaacactt 1140 acgaagacgt actgtcaatg tcactattcc gaaaagtact gcagcctatc aaaacccgca 1200 taatccaaat ctgggagaag ctgttcggag aacggaaatt tgaacagctg atgaaagcac 1260 taaactggca aacattcacc ttgtccgtac aagttacctg cggacgcagc tacatgtacg 1320 gctgggacaa cgctaacatc agaccagaca ctctccctga cttcgttgag gatgagcaca 1380 ctccggaaac tgaaacgacc gagcggccac cgaatccagt tatcgctcca gccgtgactg 1440 gttttgcttg cagcccaaac ccatccagta gctcgcctcc accatccacc catccaagca 1500 cgtctaaaag tggtcacaag ttgatgtaca gacccaaagt gaagaatact cccacgctca 1560 ctcaacataa aagtcaggta tccaatcagg atgctgcaac tcattccggg aataacacgc 1620 ctgaacaggc tggtcagaac tcctcaactt cgacgtccgc caatgctgga cctgctcaga 1680 cccaggccac ccacaaagcg gataaaggca aagccaccct gaaagaagac atcccttcct 1740 cttcaagtag tggtctagaa gcccacatta tagaggatta catggacacg tacagccgca 1800 atgacgcgcc tcccttgacg gcggaagtgg atcccttctt aagagtgaat gagcctgagc 1860 ccgtaaccaa ttctgaaaaa ccagaccagc aaacggagag ctctaaagcc acctgcactc 1920 ttgagacgga tgaaccactg ctgaacttca tgagcccacc agattggcac atcgaagcac 1980 tcaaccggaa cgcgccacac cacgaagacg atgcagccca caccacctcc acccctgaaa 2040 gagctcccga gcaggaaatc actgaagacc tacaagtgag tcccaacaat gacggaaaac 2100 cagaagagcc actcccatgg caaccctggc taaacatact caaatctgtg ggcttcaaag 2160 gtaacgagac acagctggat aaactggacc agattatcat gcctatttcc gacgttaggc 2220 atttaccaca accagatttc gtgcccggtc tcccacacaa gctcttctcc ctgctcaagc 2280 atatccaaag attgcccgta caatccaaaa tcagctctag gcgtgctaag tgttacgcca 2340 gcgacgtcaa gaacggcaga actggccttc ttacaagaca ccagtctgac gagtggaaag 2400 aaacattcag tacactcaca gaaatggaag ctccatccac atgggtcagc gttatccacg 2460 gagcaggtgg gtctggaaaa tctcaggcgc tccaagaata catgcgcagt ttgaagagtg 2520 accagaaaga gataacgatt atattgccca ctaacgagct tcgtatagat tgggaaggaa 2580 aagtgcccca catgaacacc tacgctttca agaccttcga aagagctctg attgagccag 2640 tcgaagacat atgcgtgttt gacgactatg gcaaactccc acccggctac atagaagctt 2700 tctgcatgct gcatgtcaat attacttgct tgatattaac aggtgactcc aggcaatccg 2760 tctaccatga gactaatgca caagcgctta tagctcacct cccacatgct atcatgcagt 2820 ttgaacccct atgccgatac tacttgaacg ccactcatcg caatccacgc aatttggcta 2880 atgcgctagg catctactct gaagcacccg ggcgcacaac cataaccatg agctccagac 2940 ctatgactgg ctggcccata ttatccccta gctgcgccaa gaaaacatgc tttggagaaa 3000 tgggccacgt tgctcacact tacgcagggt gccaagggct gactgctccc aaaatccaaa 3060 tggtcctaga caacaatact ccattatgca caacagaagt tatgtacact gcactttccc 3120 gtgcagtaca taacatacat ttcatcaaca ccggggccaa ctcaaaggag tattggacta 3180 agctggacgc aactccttac cttaaaactt tcctggagac tgtcagagag aaagtggtaa 3240 ctgaagatga acctcctgag cctaaagtcc gcgaggagcc cgttcgaacg cacgtggctc 3300 cagacaatga aaacttgatt ctagaggagt taatcaccga actccctgag aaacatgcgc 3360 gcgagctcta cgacaatcac cacgggcact ctaatgctat ccaaactgaa gacccagtga 3420 tccagctttt ccaacatcaa caagccaaag atgaaacgtt actctgggcc accatcgaag 3480 ctaggattaa aatctcctca ccagaagcaa acttggctga gtttatccta aagcgtgaca 3540 taggtgacat cctcttcgaa aactatgcca ttgccatgaa tgtgcccaag gagcctctgc 3600 cttttgagac aacactgtgg caggcttgta gagaagaggt cgagaagact tatctggcta 3660 aacccgtgtc agcactcatc aacggatcac tcaggcaatc tcctgacttt caccccgacg 3720 ctatatcact tttcctcaaa tcacaatggg tgaagaaagt tgagaagtta ggctgcttac 3780 acgtcaagcc tggtcaaact attgcctcat tcatgcagga gactgttatg gtctacggca 3840 cgatgtccag gtacatgagg aggatccgcc aacaacacca accagctgag atattcatca 3900 actgcgaaaa gaacccagag gacatgactc aattcataaa gcaaggatgg aactttaaaa 3960 gacaggccta ctccaacgac ttcacagcat tcgatcaatc tcaagacgga gctatgctcc 4020 agtttgaagt aatcaaagcc aagcactacg gagtacccgc ggacatcatc gaggggtatt 4080 tgcatattaa aatgaatgct aaaattttcc taggcacatt ggcgataatg cgactttctg 4140 gagaaggtcc aactttcgac gccaacacag aatgttccat agcctaccac cacacaaggt 4200 tccatgtccc aagcaacact cgcagattct ttgctggaga cgacagtgcc caagattgcc 4260 ccgccgtgga aaaatcatca ttccaagcta tatccggcag aatgagctta acatccaaac 4320 ctgtcagcta cgcacaaaaa ccgggtaagt tcgcagagtt ctgcgggtgg tctatcaccc 4380 ctttaggagt aattaaagac cccttaaaac tctacgcctc actcgagctc gcgtgccgca 4440 ctgacaacaa agaaaacgta gcgcaatcat atgctctaga tgccaaacat gcttaccaac 4500 taggtgatgc gctacatgac attctcaccc cggagcaatt cgtgatgcac caaaagacaa 4560 tccgcatgct tcacgaattg aaggtgggca atctcctaaa ataagcacta agcgggtttg 4620 taatttcctt aagccgatgg aaaacataat caacaaatta caaacccgct tcacacgcac 4680 atcactccca atatccaaac caatcatcat ccattgctgc gccggtgccg gaaagacgac 4740 attcatccgc gaactattgg agcaatttcc tgaagtccaa gcgtacacac actcacaaca 4800 tctcgcagcg gagaaaacca tcagcggcag aaattttcac catttctctg agtaccagcc 4860 ggggtatctc gacgtcattg acgagtactt ggccggaccc atacccgaaa cctgccactt 4920 ttgttttgct gatccgtacc aatacaatat tgatgcgttg cccgcccatt tcatatgcaa 4980 taagtcatac agattcggaa cactgacagc cgactacttg aactcactag gataccaagt 5040 ccgttcggcc ggcggtagtg attccatcag atttatcgac ttagcacatt gggaaccaga 5100 aggaatctgc ataacacaag atagtgacat ccttaacctt ctgacaagac acggcatttc 5160 agcataccat ccctgcgaaa cactaggact tcaatttaat tgcgttgatt acttggtgcc 5220 aaagctaccc acgcccgcca ccgctgacgc taacacatat ctagcgctca ctaggcacag 5280 ctcaaggctg aacgtagttt cagatgccgc tgacagcgcc acctgattac acacatatat 5340 tgccaattgc catagtgagc atagcggtgg ctctttccct gtatacgata accagaaaca 5400 ctttgcctca cacaggtgat aacatacacc actttcccca tggaggccgc tacagggacg 5460 gaaccaagtc tatcacctat tgcccgccac aacgcaattt atcaccgttt aacagcaccg 5520 gttacagcat catccccaca gcactcgcca tcctactccc agcggcaatt tatcttagct 5580 ctaagtgttt caatagccgc actcatcctc actcttgcag tcattgccag ccaaactccg 5640 ccaccatgcg tggtacatct tgatggcaac tccgcgcaca ttgaaaactg cagtaaccag 5700 ccagagctcc cggagctggt taacgcggct tcaaatcacg ttcgaggttt aattaaacca 5760 gaacttgaaa tcgaaccgca ctgcagttat ggcaaacact agtgccagcg cagctcttcc 5820 cgcacaatcc aaaactgacg acatgaccgc cccgcctgac aataaagact tggaggcact 5880 acagtatatc cccgagtcca acgccgtagc caccgccgac caaatccacg ccatagctgc 5940 tctctggaaa tccattggtg ttccagctgc aaagttggga ccttacgctt gggacttagc 6000 ccgccattgt gcggatgttc agtcatcatc ccaagccaaa atcgtgggca ccccaccagg 6060 agagagcaaa ctcacacgcc agatgctagc tgcatcaatt aaaagcatct gcacgctccg 6120 ccaattctgc atgtactttg ctccggtagt ctggaatatg atgatactca ctgaccagcc 6180 tccagcgaac tggtccaaac tcaactaccg tgaatcagaa agattcgctg ctttcgactt 6240 ctttgacgga gttactcaca cagcagctct gcaccctatc ggagggttga tacgcccgcc 6300 aagcgaagca gaacgtgtcg ccaacgcggc acaaaagggc ttacacatct acaaagcagc 6360 tcagcagaag aatcagctca cctccaccgc agtggagttc acccgtgctc aagtcggcag 6420 tgcgccctca ctcaccctac ttccaccaaa ctaacaccgc cgtaatttaa taaataaagc 6480 aagcttgccg gagataacgt gctccgccca ctgggttttc acgtgctaac atagagcgac 6540 ttaatagctc cctacgcata agatttaaca cattttactt at 6582 //