ID AB218608; SV 1; linear; genomic RNA; STD; VRL; 4375 BP. XX AC AB218608; XX DT 28-OCT-2005 (Rel. 85, Created) DT 18-AUG-2007 (Rel. 92, Last updated, Version 3) XX DE Heterocapsa circularisquama RNA virus DNA, complete genome, isolate: DE HcRNAV34. XX KW . XX OS Heterocapsa circularisquama RNA virus 01 OC Viruses; Riboviria; Alvernaviridae; Dinornavirus. XX RN [1] RP 1-4375 RA Nagasaki K., Mizumoto H., Shirai Y.; RT ; RL Submitted (07-JUN-2005) to the INSDC. RL Keizo Nagasaki, National Research Institute of Fisheries and Environment of RL Inland Sea, Harmful Algae Control Section, Harmful Algal Bloom Division; RL 2-17-5 Maruishi, Ohno, Saeki, Hiroshima 739-0452, Japan RL (E-mail:nagasaki@affrc.go.jp, Tel:81-829-55-0666, Fax:81-829-54-1216) XX RN [2] RX DOI; 10.1128/AEM.71.12.8888-8894.2005. RX PUBMED; 16332886. RA Nagasaki K., Shirai Y., Takao Y., Mizumoto H., Nishida K., Tomaru Y.; RT "Comparison of genome sequences of single-stranded RNA viruses infecting RT the bivalve-killing dinoflagellate Heterocapsa circularisquama"; RL Appl. Environ. Microbiol. 71(12):8888-8894(2005). XX DR MD5; 53f877f73aca9d74f831c54e620d8c0f. DR EuropePMC; PMC1317472; 16332886. DR EuropePMC; PMC3526182; 22791238. DR EuropePMC; PMC5322306; 27911439. XX FH Key Location/Qualifiers FH FT source 1..4375 FT /organism="Heterocapsa circularisquama RNA virus 01" FT /isolate="HcRNAV34" FT /mol_type="genomic RNA" FT /note="UA-type" FT /db_xref="taxon:2030964" FT CDS 19..3018 FT /codon_start=1 FT /transl_table=1 FT /gene="HcRNAV34 ORF-1" FT /product="polyprotein coding for replicases including FT RNA-dependent RNA polymerase region" FT /db_xref="GOA:Q3C207" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q3C207" FT /protein_id="BAE47069.1" FT /translation="MVFLTAAISTSLWATGTTGAVGATTYFGVKFRRRVRAWLHYRQLN FT LRVGHFTSKGKLFYREDADGPLYQAVLKRSKGINPRGELIDPEYDYTELSTSLMSFNES FT SLVGSTPVRRIPRSLAPSHLVVLFSDDQVSGVGFRMGENLITARHVLDLTHNLWVQGPR FT GRIRVEEPPVTPPVSDYEYTGADICYIPLTPGQWADLGVKSMKKNAVSLSAAGLIKLYG FT ADEDGLYESIGPLKVDPSLTKGKGLISYVASTTPGFSGSPVLLRNAGGGESVVGMHVCG FT DFKGNGANHGVGASSINLILKGTGAVPDALTVSDFLGPSKLESAMYYDKQETYWDWVFD FT QECEREEAAREAEEAEIEHLRDLYYGETTLALAPVAPPVPSFNGPGARALRSYNESALN FT VPARLGELSPRVGPVESSTHLPRFLMGASTERFWSRSINDTPPAPLQRESPTLKATPEL FT VVSMFTKIAEGDHKAFLLAIDMSYDDLLNCTKDEVMDPFSDFRQYLEHTRKLMKKNDGG FT RELSDQSGRTFFRETHRTTQSGGGKKRTAPVWLNEESKAFLRGLGVEGEYCRPPNDEAS FT IIRSMENQAARQLGSRAWPSTGAMEPFLVQYLGDAAVSPPTFSPGRQGFDQLYRSFDDS FT SAGWTRRYRNLTKKSYVSGPHCGELTRIAVARILLRCTMWHRIPSMTPEEMVWLGLRDP FT TDVFVKDEPHTADKARREMWRLIWNVSLVDSICQAYFNRELNLQQNRDYQGGHPVPHTC FT GMGHHDEGIKRLGEAIEAAFPDGIVCSSDASGWDMSVSRDGLIFDGLVRAIRTQDPSAT FT AYHNIGTSVCILLDKFVQSAHMICTGTSLWSVDVYGITASGLPDTTTQNSFVRGMGAKL FT AGCFKALTAGDDLLCDNRLRLPVLTEHGTITKGDVTTANWRKGQPVGFTSHSLVRGPDG FT QWSAHFENESKALHRLLLSGKTPLPEQIGGVAFAERKDEAQLGRLRAVCDSRGWPVPPQ FT SEWAEDFDLC" FT CDS 3182..4261 FT /codon_start=1 FT /transl_table=1 FT /gene="HcRNAV34 ORF-2" FT /product="major viral capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q3C206" FT /protein_id="BAE47070.1" FT /translation="MTRPLALTNGGNTNGGNNGGSRRRPPRQRRQGRRRNRRRGGGGGG FT PRNNAAMVLAQGAGSVPGMPFGSWPSRSTMRAWDAFHPEHLPLPRSVGPYCVVRTSSLI FT TSSDKVMLFAPMVGSAGCWLTACAMGSRTEGGAINGLDNTNVYTVPFPGIATTGSSITV FT VPAALSVQVMNPNPLMSTTGIFGGTVSHTQLNLAGRTETWNDFSMEVISFMRPRLMSAG FT KLALRGVQGDSYPLNMSALSNFNCLSDVAEGKLSWTDSSGHYPAGLAPLVFVNEAKQTM FT NYLVSVEWRVRFDIGNPAVAAQRHHGITPEWKWDDMIKTAIARGHGIMDIAERVANAGS FT FVANAAIAARRAMPALMAA" XX SQ Sequence 4375 BP; 832 A; 1170 C; 1239 G; 1134 T; 0 other; tcccggcctc aaggaagcat ggtcttcctt actgcagcta tttccactag cctgtgggct 60 actggaacca ctggcgccgt tggcgccacc acttactttg gggttaagtt tcgccgtcgt 120 gttcgagcct ggctccacta ccgccagctt aacctccgtg tcggacactt cacctctaag 180 gggaagttgt tttatcgcga ggacgcagat gggccgcttt accaggcggt tctaaagcgt 240 tctaaaggaa tcaaccctcg gggcgagctt attgatcctg agtacgatta cactgagttg 300 tcgacttcgt tgatgtcttt taacgagtcc tccttggtgg ggtcgactcc tgtgcgccgc 360 attccgcgtt cactcgcgcc cagtcatttg gttgtcctat tttcggatga ccaagtctcc 420 ggggttggct ttcgtatggg cgagaatctg attactgccc gtcatgtcct cgatcttacg 480 cacaaccttt gggtccaagg cccacggggt cgtattcgag ttgaagagcc acccgttact 540 ccccccgttt ctgattacga atatactggg gcggacattt gctatatccc tttgacgccc 600 ggtcaatggg ctgatttggg tgtaaagtcc atgaagaaga acgcggttag cttgtctgcc 660 gcgggtctta tcaagttata tggcgctgac gaagacggcc tttacgagtc tattggccct 720 ctgaaggttg acccttcgct cactaagggc aagggtctca tctcttacgt tgcgagcacc 780 acccctggtt tctccggttc gcccgtctta ttgcgtaatg ccggaggtgg cgagagcgtg 840 gttggcatgc acgtttgcgg tgacttcaag ggcaatgggg ctaatcacgg cgtcggggct 900 tcttccatta atcttatttt aaaggggact ggagctgtac ctgacgcttt gaccgtgtcc 960 gattttctcg gacccagtaa gcttgagtcc gccatgtatt atgataagca agagacttat 1020 tgggactggg tctttgacca ggagtgcgag cgcgaggaag ctgcacgtga ggctgaagag 1080 gctgagattg aacatctccg tgatttgtat tacggtgaaa ctacactcgc cttggcgcct 1140 gtcgcccctc ccgtgccgtc ttttaatggc ccgggagcgc gtgctctgcg atcgtataac 1200 gagagcgccc ttaatgttcc agcccgattg ggggaacttt ctccgagggt tgggccagta 1260 gagagctcga cgcatcttcc ccgttttcta atgggagcgt ctaccgagcg tttctggtct 1320 cgtagcatta acgacacccc acccgcgccc ctccagcgcg agagccctac tcttaaggcc 1380 actccggagc tagtcgttag tatgttcact aaaatagctg agggcgatca taaagcattc 1440 ctcttggcca ttgacatgtc atacgatgac ttgttgaatt gcaccaaaga cgaggtcatg 1500 gatcctttct ctgatttccg tcaatatttg gagcataccc ggaagctcat gaagaagaac 1560 gatggaggtc gtgagctttc tgaccaatcc ggtcgcacct tctttcgcga gactcatcgc 1620 accacccagt ccggtggtgg taagaagcgt acggctccgg tttggctcaa tgaggagtct 1680 aaggcctttc ttcgtggctt gggtgttgag ggagagtatt gtcgtcctcc taatgatgag 1740 gcgtctatta tccgctctat ggagaatcag gctgcccggc aattggggtc tagggcttgg 1800 ccttctactg gtgctatgga accattcctg gttcagtacc ttggtgatgc ggccgttagc 1860 ccacccacct tttctccggg tagacagggt tttgatcagc tatatcgttc ttttgacgat 1920 tcgagtgccg gatggactcg tcgttatcgg aatctgacga agaagtccta tgtgagcggc 1980 ccacattgtg gtgagctcac taggattgct gtggcccgta ttctccttag gtgcaccatg 2040 tggcaccgca tcccctcgat gacgcccgag gagatggtgt ggttgggtct tagagacccc 2100 acagatgttt tcgtcaaaga cgaaccccat acggccgata aggctcgtag ggagatgtgg 2160 cggctcattt ggaatgtctc cttggtcgat tcgatctgcc aggcttactt caatcgtgag 2220 cttaatcttc aacagaatcg ggactaccag ggtggccatc ctgttccgca cacttgcggt 2280 atgggccacc acgacgaggg catcaaacgc ctcggtgagg ccatcgaggc cgctttcccg 2340 gacggaattg tgtgcagcag tgatgcttcg ggctgggaca tgtccgttag tcgcgacggc 2400 ttaatctttg atgggcttgt tcgcgctatt aggacccagg acccttccgc tactgcgtac 2460 cacaatatcg gtacttctgt gtgtattctt ctggacaagt ttgtccagtc ggctcacatg 2520 atttgtaccg gtacttcttt gtggtccgtc gacgtctacg gaataacggc ttctggcctc 2580 ccggatacca ccactcagaa ttcttttgtt cgtggtatgg gggcgaagct tgccggctgt 2640 tttaaggccc tcacggctgg cgacgatctt ttgtgcgaca accgtcttcg cctccctgtg 2700 ttgacggagc atggcaccat tacgaagggt gatgttacca ctgcgaactg gcgaaagggc 2760 caaccagtgg gttttacatc ccattcgttg gttcgagggc ctgatggtca atggtcagcc 2820 catttcgaga atgaatcgaa ggcccttcac cgcctccttt tgtctggcaa gacccctctt 2880 cctgagcaga ttggaggagt ggctttcgcc gagcgcaaag atgaggctca gttaggtcgc 2940 cttcgcgcag tttgcgatag tcgtggctgg cctgttcctc cccagtctga gtgggctgag 3000 gattttgacc tgtgctagcc cataaagtcc tttggctggc gtcttggcag caaagtttgc 3060 gaggcatttt gtttcacttt agcgcggctc ttgtggccat tctagtgcag gcaatctgcc 3120 agattgtaat tgcttagtgc ggttaatcca acccttagtg caggcaatct gccatattat 3180 aatgacccgt cccctagctc ttaccaatgg cggcaatact aatggaggca ataacggcgg 3240 ctctcgccgc cgtcctcccc gacagcgccg ccagggcagg cgccgaaacc ggcgcagggg 3300 cggtgggggt ggcggccccc gtaacaatgc cgctatggtg ttggcccagg gagctgggtc 3360 cgtgcccggg atgccttttg gcagctggcc ttcgcgtagt acaatgcgag cctgggatgc 3420 ctttcaccct gagcaccttc cgctccctcg gtcagtgggg ccctattgcg tggttcgcac 3480 gagcagcttg attacgtcca gtgacaaggt catgttgttt gctcccatgg ttggcagcgc 3540 cggctgctgg ctaacggcat gtgcgatggg gtcccgcact gaaggcgggg ctattaatgg 3600 acttgataat accaacgtgt acaccgtacc ctttccgggg atcgcaacca ctggtagcag 3660 tatcacggtc gtgcctgcgg cgttgtcagt ccaggttatg aaccccaacc cacttatgtc 3720 caccactgga atctttggtg gcacagtttc acacacccag cttaatcttg cagggcgtac 3780 agagacctgg aatgatttct ctatggaggt gatttctttt atgaggccgc ggcttatgtc 3840 ggctgggaag cttgccctgc gcggagtcca gggagatagc taccccctta atatgtccgc 3900 gttgtccaac ttcaattgtc ttagcgacgt ggcagaaggc aagctttcgt ggactgattc 3960 cagcgggcat tacccggctg gtttggcgcc gttagtcttt gtgaacgagg caaagcaaac 4020 aatgaactat ctggtgtccg tcgaatggcg cgtccggttt gacatcggca accctgctgt 4080 tgccgcccaa cgccaccacg gcattacgcc ggagtggaag tgggatgata tgattaagac 4140 tgcgattgct cgcggtcacg gtattatgga tatcgctgag cgtgtcgcca acgcgggctc 4200 gtttgtcgca aacgctgcga ttgcggcccg cagagctatg ccagcattga tggctgctta 4260 atgcgttgca tggcgtcatc tatatgggtt cccaagaagt gtcggaggta aagaccaccc 4320 actgggatgc aagactgccg ggcgggaggg gtctcccccc ctcccgctcc ggtgc 4375 //