Dbfetch
ID AB197937; SV 1; linear; genomic RNA; STD; VRL; 6226 BP. XX AC AB197937; XX DT 06-JUL-2005 (Rel. 84, Created) DT 06-JUL-2005 (Rel. 84, Last updated, Version 1) XX DE Cymbidium mosaic virus genomic RNA, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6226 RA Tanno F., Itoh K.; RT ; RL Submitted (05-JAN-2005) to the INSDC. RL Fuminori Tanno, Niigata University, Center for Transdisciplinary Research; RL Ikarashi-2, 8050, Niigata, Niigata, 950-2181, Japan RL (E-mail:tanno@agr.niigata-u.ac.jp, Tel:81-25-262-7522, Fax:81-25-262-7522) XX RN [2] RA Tanno F., Itoh K.; RT "Nucleotide sequence of a Japanese isolate of Cymbidium mosaic virus"; RL Unpublished. XX DR MD5; a3e8a534acaed459dd30c1beaec9b179. XX FH Key Location/Qualifiers FH FT source 1..6226 FT /organism="Cymbidium mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12178" FT CDS 73..4326 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q4LEP3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4LEP3" FT /protein_id="BAE06191.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPVKNKIRELVQLFTGMDQFNQLLKALDW FT QTFSYAMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKH FT DPSNPETEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDNPSTSTAPAVTFAA FT GINSSAPTNISFGSFTHEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVPDDCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRTSALELPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITDPDKNKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQI FT AHTNDFTAFDQSQDAAMLQFEIIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKGARSYALDAKYAY FT DLGDRIHEVLNADEMTSHFNVIRQLHQLHQQDVLVPPETTVATAVKSQPDVEDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4332..5033 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB 1" FT /product="triple gene block 1" FT /db_xref="GOA:Q4LEP2" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4LEP2" FT /protein_id="BAE06192.1" FT /translation="MELAYLIRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYQALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT CDS 5008..5346 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB 2" FT /product="triple gene block 2" FT /db_xref="GOA:Q4LEP6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q4LEP6" FT /protein_id="BAE06193.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHAKYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT CDS 5201..5476 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB 3" FT /product="triple gene block 3" FT /db_xref="GOA:Q4LEP5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q4LEP5" FT /protein_id="BAE06194.1" FT /translation="MLSTRNILTTSGLPPPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWRGLSYHNNLK" FT CDS 5479..6150 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q6T803" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q6T803" FT /protein_id="BAE06195.1" FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6226 BP; 1664 A; 1818 C; 1212 G; 1532 T; 0 other; gaaaaccaaa cctcacgtct actccgctat ccgagcgaaa tagcagcccc agcataggca 60 atatcgcgct ccatggcccg agtacgtgac acccttgaca ggctccgtga tccgtcggtc 120 cttacctcaa ttaacgagga agcccaccga cacatccgcc ctgtccttgc ctcggcactc 180 gtaaactgcc cttacgcgtt gaccgaggaa gaggccgact gtctcgaaaa tctcggcgtg 240 acagtcaacc ccttcgccat ccaaacgcat acacatgctg cagctaaaac tgttgaaaat 300 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt catattcctt 360 aagcggagca agcttcgtta cctacgacgc gccgccaaca acaaagacat atttcaaaac 420 caacacattg agcctaaaga cttattgcgt tacgatgacg agtcttgtga agtaatgcca 480 gaatgctcca caagcacagc ctacatcagc gatgctctcc atttcttgag ctacgctcag 540 cttgggaaaa tattccagga ttctcccaag ctgaaaattc tgttggcaac cctggtcctc 600 cccgtggaag ccctccatag acacccatct ctttaccctg ccatctatac tttgaactac 660 cataaagatg gctttgaata tatacccggc aatcacgccg gaggtgccta cttccacgag 720 tactccactc tgcagtggtt gactctcggg aaactaatta tcaacgatcc tttgaaagta 780 aagaaacccc ttactcttac tgtacagcta atagaaagtc taggggctaa ccatctttta 840 cttatcaccc gaggggatct tcgcacaccc aaactacgga cattcgctaa agatacccat 900 gttctactac cacaaatatt ccatcctaag ggtatgaatg cgaacaaacc attgtccaaa 960 cgtagagcta tgcagttgtg gctctacgcc aaatctgtta aagaggtgag cgaacgggat 1020 ctttatgcta aggtgaggca attgatcccg acttccgagt tagacctttt tgaccccgtg 1080 gaggtgaccc atttggtcaa ttacttacta ttcatcagtc acctttcttc cgtatcttcg 1140 tatgacgaca tcttgtcgtc taatatattc caacatttta ccattccagt caagaacaag 1200 atacgggaat tggtccagct attcaccgga atggaccaat ttaatcaact gctcaaagct 1260 ctcgactggc aaactttttc gtacgctatg ccagtagaga ccatccatac acgcgcggcc 1320 aattatcaag tcgctaaaac gcttcgcatg tgcagagacc taccatgcga tgaatatgat 1380 cgtgtaaagg atgtcctcag acagctccct gacggagtga cgttgtttga ggaaaacgac 1440 aagcatgatc cctcaaaccc tgaaaccgag gattctgagg atgacactga ctccgtcgac 1500 ttcaaccttc cccctactca tgacttgccc ccaaactttg accctctaga caagggcaag 1560 tccattatcg ttgatactga caacccctca acttctacgg cacctgccgt cacttttgcc 1620 gccggtatca actcctcagc ccccacaaat atttcatttg gaagcttcac acatgaggct 1680 gaggccaccc cccctcctcc catggaaaag ttgccatggg atctttggat tcccctactg 1740 gaacaacatg gttttaaagg aaagagtaag ctgtacaagc ccacgggtga actaatctgc 1800 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt cccggatgac 1860 tgtgtgcttg cgcttaaatc tattaagcgt ttcgccacaa aaatgactat gctcagttct 1920 cgagcttccg cctacacttc tgacattaag aatagtagga ctgggaagct cctacccgcc 1980 atgaacatgc cctggaaagc ctctctcgcc tatgtcactc aacatggtga cagagaaatt 2040 cctggcgtcg tgatccatgg tgccggtggc tgtggcaaat cttatgccat ccaaaaatgg 2100 ttgagaagct gctctgaccc ttgcgcagct actgtggtat gcccaactct agaactacgt 2160 aatgactggc tcaataagat cggaagctac gaacaaacga atatcaaaac ttttgagaaa 2220 gctttaattc agccagtcaa caacgtagtt atctttgatg actacaccaa gctaccccct 2280 gggtacatcg agaccatggt gtaccatcac cacaacctcg acctgatcat attaactggg 2340 gatcctatgc agagtgccta ccatgaaact aacagggatg cctatatctc tttaatacct 2400 gatgcctctg ccatttttag tgagtactgt gagttcaaca ttaacgctac ccaccgtaat 2460 gtggctgaac tcgcttgcct cctcggtgtc tattccgaac gccaaggcaa actcacagtc 2520 tccttcagca cagccccact ttctaaaggt aaagtaccca ttctggtacc ctctagaatg 2580 aagcaagagg cttttgctga tgtcggcaac cgttgcatga cttacgccgg ttgccagggt 2640 ctcactgccc ctaaaatcca aattttgata gacaaccaca ctacgttctg ctctgaacaa 2700 acattataca cttgtctatc acgagctgtg gaccaaatcc acttcattaa cactggtccc 2760 aactcgcagg ctttctggac caaattggaa tcaacgccgt acctaaaagc tttcctcgat 2820 aattaccgtg aggaacaaac tgaacggcta acatctaccg ccccagagcc tgaagtccgt 2880 gagccagcag ccccaaaaac gcatatccct gtcgaaaata catctggctt acgtacctct 2940 gcacttgaac tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttca 3000 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc aaaggatgaa 3060 acccttttca aggctaccat agacgctaga ctctctataa cagatcctga taaaaataaa 3120 agagagtttg ccatgaagaa agacactggg gacgtccttt ttgtcaatta caaagctata 3180 atgaatctac ctcatgagcc tgttcctttt gaacctcgtc tctggaacat ctgcaaagct 3240 gaagtgcaga acacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg 3300 caatcacctg attttccagc caataaaata gccttattcc tgaaatcgca atgggtaaag 3360 aaaattgaaa aaattggagc cataccagtt aaacctggac agactattgc atcatttatg 3420 caagagactg ttatgctgta tggcaccatg gcacgctacc tccgtaagat gcgacaaaga 3480 tatcaacccg cacatatatt catcaattgt gaaaagactc cggaggactt caataaattc 3540 atacttgaac actggtcaca caagcaaatt gcccacacca acgattttac tgcttttgac 3600 cagtcacaag atgctgccat gctccaattt gaaattatca aagctaggta cttcaatatc 3660 cccgaggatg ttatagaagg atacatccaa attaagctca ctgctgaaat cttcctcggg 3720 acactttcca tcatgcgcct atctggtgaa gggccaacct tcgacgccaa tactgaatgc 3780 tctattgcct acaacgccac cagataccat attaatgaag acgtcaccca agtatacgcc 3840 ggtgacgaca tggccatgga ccatgtatgc cctgagaaga agagcttcaa agctttggaa 3900 aagaaactga aattaacctc aaaacctttg tatccaaagc aaaaacctgg agactgggct 3960 gatttctgcg gctggactat aacgccttat ggcatcatta agaatcctaa gaaacttgac 4020 gcatgcctac aattgcacac ccaactgggc gatgccgata aaggcgctag gtcatacgca 4080 ctcgatgcca aatatgctta tgatctgggc gatcgcattc atgaggttct gaatgctgat 4140 gaaatgacca gccacttcaa tgttataaga cagttgcacc aactgcatca acaagatgtg 4200 ctggtcccac ccgagactac cgtagccaca gcggtaaagt ctcaacctga cgtggaggat 4260 ctgtggctcc gtgcgcttag cttccctgac tggacggacc gcgcccaact tttaaaacgg 4320 ggttaatttc gatggagcta gcgtacttaa ttagattact agagcacaat aaattcgagc 4380 gcaccaatct gcccctttcc tcacccttag ttgtacacgg aatcgctggc agtggaaaat 4440 ccaccatcct cacaactttc catcaccatt acccggctca ccctatcttc tcacacagtc 4500 ccacattgct tgaccctagc aaccgcatat accaacagtg catcactact gattcggtgc 4560 cagacggtgc tatcgtagac gagtacaatt accaagcact cgactactct cgctgtctag 4620 ccctcttcgg tgatccactc cagcttccac attcacttca accccactac tactctagtc 4680 gcacccaccg ctacggtccc aagctcacta gcctactcaa cgacctcttc cacctttcta 4740 tcacttccct tgcccccgtc gacagccttg attacgctga tccttttgct gtcgacccct 4800 ccggatttac cattgctgac gaggaagtgt acaactttgt ctctcagcag gttcccggca 4860 ctttgttgcc gctcgatact gtaggtttag aatattctag tgttagcttt tactgcagtg 4920 atctccgacg ctgtgttgta ctaaggccac tcagcacctt catcgctctc acccgcgcca 4980 agggcaacct caccattttc gatttcaatg ccaggtttag ttccaccacc tgaccactcc 5040 aagtcactct tcgtcctcgc tattggcata actgtggtct ccgcattatt tgtgctaaag 5100 tcccacactt ttccaattgc aggcgacaat attcaccgct tcccctccgg cggccaatat 5160 aaagacggta ctaagcagat aaactactgt ccacctactc atgctaagta cccgaaatat 5220 cctgactaca agtggcttgc cgccaccgcc gccatcgtca tccctctctg cctatatatt 5280 tcctaccatc ctggcaataa tattcgccgt atttgccctt gttgcaatac atatcaccac 5340 ccctgagccc ttctgtacca tacacataga cggggcgtct attactatca ctaactgccc 5400 cgatcctgca gctatattag ataaagtagc cataggtccc tggcgagggt taagttacca 5460 caataacttg aaataatcat gggagagccc actccgactc cagctgccac ttactccgct 5520 gccgacccca cttctgcacc caagttggcc gacctggctg ccattaagta ctcacctgtt 5580 acctcctcca tcgccacccc cgaagaaatc aaggccataa cccaattgtg ggttaacaac 5640 cttggcctcc ccgctgacac cgtaggtacc gcggccattg acctggcccg cgcctacgct 5700 gacgtcgggg cgtccaagag tgctaccctg ctcggtttct gccctacgaa acctgatgtc 5760 cgtcgcgccg ctcttgccgc gcagatcttc gtggccaacg tcaccccccg ccagttttgc 5820 gcttactacg caaaagtggt gtggaatctg atgctggcca ctaacgatcc gcccgccaac 5880 tgggccaagg ctggtttcca ggaggatacc cggtttgccg cctttgactt cttcgatgcc 5940 gtcgattcca ctgccgcgct ggagcctgct gaatggcagc gccgccctac tgaccgtgaa 6000 cgtgctgcgc actcgatcgg gaagtacggc gcccttgccc gtcagcgtat ccaaaacggc 6060 aacctcatca ccaacattgc cgaggtcacc aagggccatc ttggctccac caacactctc 6120 tatgctctgc ctgcaccccc tactgaataa cgccaaactt aataaggcgt gtggttttct 6180 aaagtttgtt tccactactg gcataatatg tttagccaga ttaaat 6226 //