ID AB195999; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC AB195999; XX DT 26-JUL-2010 (Rel. 105, Created) DT 26-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Potato virus X genomic RNA, complete genome, strain: BH. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RA Namba S., Komatsu K., Oshima K., Yamaji Y.; RT ; RL Submitted (02-DEC-2004) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RX DOI; 10.1007/s11262-005-2205-z. RX PUBMED; 15965614. RA Komatsu K., Kagiwada S., Takahashi S., Mori T., Yamaji Y., Hirata H., RA Ozeki J., Yoshida A., Suzuki M., Ugaki M., Namba S.; RT "Phylogenetic characteristics, genomic heterogeneity and symptomatic RT variation of five closely related Japanese strains of Potato virus X"; RL Virus Genes 31(1):99-105(2005). XX DR MD5; ca2495467e62c82f7bbd9c3ccbf2af81. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /strain="BH" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido" FT /db_xref="taxon:12183" FT CDS 85..4455 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:E1CAH6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E1CAH6" FT /protein_id="BAJ12041.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ FT WLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL FT DCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR FT EVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELILPIT FT KPVPARWEDASFTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS FT DVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVTLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDRLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486..5166 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp1" FT /product="Triple gene block protein 1" FT /db_xref="GOA:E1CAH7" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:E1CAH7" FT /protein_id="BAJ12042.1" FT /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRKVADLIASRGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEEAETTLSRHGVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147..5494 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp2" FT /product="Triple gene block protein 2" FT /db_xref="GOA:Q77RX1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q77RX1" FT /protein_id="BAJ12043.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH FT TCACGNNHSSH" FT CDS 5427..5639 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp3" FT /product="Triple gene block protein 3" FT /db_xref="GOA:Q85247" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q85247" FT /protein_id="BAJ12044.1" FT /translation="MEVNTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT CDS 5650..6363 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q77LU0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q77LU0" FT /protein_id="BAJ12045.1" FT /translation="MSAPASTTQATGSTTSTTTKTAGATPATASGLFTIPDGDFFSTAR FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" XX SQ Sequence 6435 BP; 1970 A; 1525 C; 1483 G; 1457 T; 0 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttacacgcc 60 cgcttgaaaa agaaagtcta acaaatggcc aaagtgcgcg aggtttacca atccttcaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccatcatg 180 gaaaaacata aactagctaa cccgtacgct caaacggttg aagcggctaa tgatctagag 240 gggttcggca tagccaccaa tccctatagc atcgaattgc atacacatgc agccgctaag 300 accatagaga ataaacttct agaggtgctt ggctccatcc taccacaaga acctgttaca 360 tttatgttcc ttaagcccag gaagctaaac tatatgagaa gaaacccgcg gattaaggac 420 attttccaca atgttgctat tgaaccaaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgacaaac tcacagagat cacaacggac acagcatata ttagtgacac tctgcacttc 540 ttggatccga gctacatagt ggagacattc cagaactgcc caaaattgca aacattgtat 600 gcgaccttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca cccaaacata 660 tacagcctca aatacttcgg agatggtttc cagtatatac caggcaacca tggtggtgga 720 gcataccatc atgaatttgc tcatttacaa tggctcaaag tgggaaagat caagtggagg 780 gaccccaagg atggctttct cggacatctc aattacacga ctgagcaggt tgagatgcac 840 acagtgacag tgcagttgca ggaatcgttc gcggcaaacc atttgtactg catcagaaga 900 ggggacctgc tcacaccgga ggtgcgcact ttcggccaac ctgacaggta tgtgattcca 960 ccacagatct ttctcccgaa agttcacaac tgcaagaagc cgattcttaa gaaaactatg 1020 atgcaactct tcttgtatgt taggacagtc aaagtcgcaa aaaattgtga catttttgcc 1080 aaagtcagac aattaattaa atcatccgac ttggacaaat attctgccgt ggaactggtt 1140 tacctagtaa gctacatgga gttcctggct gatttacaag ctaccacctg cttctcagac 1200 acactttctg gtggcttgct aacaaagacc cttgcaccgg taagggcttg gatacaagag 1260 aaaaagatgc agctgtttgg tcttgaggac tacgcgaagt tagtcaaagc agttgatttc 1320 cacccggtgg atttctcttt taaagtggaa acttgggact tcagattcca ccccttgcaa 1380 gcgtggaaag ccttccgacc aagggaagtg tcggatgtag aggaaatgga gagtttgttc 1440 tcagatgggg acctgcttga ttgctttaca agaatgccat cttacgcagt aaacgcagag 1500 gaagatttag ctgcaatcag gaaaacgcct gagatggatg tcggccaaga agttaaagaa 1560 cctgcaggag acaggaatca atactcaaac cctgcagaaa ctttcctcaa caagctccac 1620 aggaaacaca gtagggaggt gaaacatcag gccgtaaaga aagctaaacg cctagctgaa 1680 atccaggagt ccatgagagc tgaaggtgag gccgagtcaa atgagatgag cggaggcatg 1740 ggggcaatac ctagcaacgc cgaacttcct agcacgagtg atgcccgaca agaactcata 1800 ctcccaatca ccaaacctgt ccctgcaagg tgggaagatg cttcattcac agattctagt 1860 gtggaagagg agcaggtgaa actccctgga aaagaagccg ttgagacagc aacacaacaa 1920 gtcatcgaag gactcccttg gaaacactgg atccctcaac taaatgctgt tggattcaag 1980 gcactggaaa ttcagaggga tagaagtgga acaatgatca tgcccatcac agaaatggtc 2040 tccgggttgg aaaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgccatga acagaagccc tgccaccatc cctttggacc tgcttagagc cagagactac 2160 ggcagtgatg tgaagaataa gagaattggt gccatcacaa agacacaagc gacaagctgg 2220 ggcgagtacc taacaggaaa gatagagagc ctgaatgaga ggaaagttgc gacttgtgtc 2280 attcatggag ctggaggctc tgggaaaagt catgccattc agaaggcatt gagagaaatt 2340 ggcaagggct cagacatcac tgtagtcctg ccgaccaatg aactgcgact agattggagt 2400 aagaaggtgc ccaacactga accgtacatg ttcaagacct atgaaaaggc gttgattggg 2460 ggaacaggca gcatagtcat ttttgacgat tactcaaaac ttcctcccgg ttacatagaa 2520 gccttaatct gtttttactc caagatcaag ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgaaactgc agaggacgcc tctatcaggc atttgggacc agcgacagag 2640 tacttctcaa aatactgccg atactatctc aatgccacac accgcaacaa gaaagacctt 2700 gcgaacatgc ttggtgtcta cagtgagagg acgggagtta ccgaaatcag catgagcgcc 2760 gagttcttag aaggaatccc aactttggta ccctcggatg aaaagagaag gctgtacatg 2820 ggtaccggga ggaatgacac gttcacatac gctggatgcc aggggctaac taagccgaaa 2880 gtacaaatag tgctggacca caacacccaa gtgtgtagcg cgaatgtgat gtacacggca 2940 ctttctagag ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttc 3000 tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt gagagaacaa 3060 gcactcaagg agtacgagcc ggcagaggca gagccaattc gagagcctga gccccagaca 3120 cacatgtgtg tcgaaaatga ggagtccgtg ctagaagagt acaaagagga actcttggaa 3180 aagtttgaca gagagatcca ctctgaatcc catggccatt caaactgtgt ccaaactgaa 3240 gacacaacca ttcagttgtt ctcgcatcaa caagcaaaag atgagaccct cctctgggcg 3300 accatagatg cgcggctcaa gaccagcaat caagagacaa acttccgaga attcttgagc 3360 aagaaggaca ttggggacgt cctgttttta aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtattc ccttttcaca agaggtctgg gaagcttgtg cccatgaagt acaaagtaag 3480 tacctcagta agtcgaagtg caacttgatc aatgggactg tgagacagag cccagacttt 3540 gatgaaaaca aaattatggt attcctcaag tcgcagtggg tcacaaaggt ggaaaaacta 3600 ggtctaccca agattaagcc aggtcaaacc atagcagctt tttatcagca gactgtgacg 3660 ctttttggaa ctatggctag gtacatgcga tggttcagac aggctttcca gccaaaagaa 3720 gtcttcataa actgtgagac cacgccagaa gacatgtctg catgggcctt gaacaactgg 3780 aatttcagta ggcctagctt ggctaatgac tacacagcct tcgaccagtc tcaggatgga 3840 gctatgttgc aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaattatc 3900 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt gtcaattatg 3960 cgcctgactg gtgaaggtcc cacctttgat gcaaacactg agtgcaacat agcttacacc 4020 catacaaagt ttgacatccc ggccggaact gctcaagttt atgcaggaga cgactcagca 4080 ctggactgcg ttccagaagt gaagcatagt ttccataggc ttgaagacag attactcctc 4140 aagtcgaagc ccgtgatcac gcaacaaaag aaaggcagtt ggcctgagtt ttgtggttgg 4200 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag cttaaaattg 4260 gccgaagcta agggtgaact caagaaatgc caagattcct atgaaattga tctgagttat 4320 gcctatgacc acaaggactc tctacatgac ctgttcgatg agaaacagtg tcaggcacat 4380 acactcactt gcaggacact aatcaagtca gggagaggca ctgtctcact tccccgcctc 4440 agaaactttc tttaaccgtt aagttacctt atagatttga ataagatgga tattctcatc 4500 attagtttga aaagtttagg ttattctagg acttctaaat ctttagattc aggaccttta 4560 gtagtacatg cagtagctgg agccggtaag tccacagccc taaggaagtt gatcctcaga 4620 cacccaacat tcaccgtgca tacactcggg gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaga agccaggacc tattcctgag ggcaatttcg caatcctcga tgagtatact 4740 ttggacaaca ccacaaggaa ctcataccag gcactttttg ctgaccccta ccaggcacct 4800 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc gaggaaagtg 4860 gcagatttga tagcaagtcg tggtttcgat ttcgagacca attcacagga ggaagggcac 4920 ttagagatca ctggtatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gaggctgaga caacgctgtc caggcatggt gttgagtttg ttaagccctg ccaagtgact 5040 ggacttgagt tcaaagtagt cactattgtg tctgccgcac caatagagga aattggccag 5100 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagactg accgctccgg tcaattctga aaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttctgctttc tagaaatagt ttaccccacg tcggtgacaa 5280 cattcacagc ttaccacacg gaggagctta cagagacggc accaaagcaa tcttgtacaa 5340 ctccccaaat ttagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttgc tgatctatgg aagtaaatac atatctcaac gcaatcatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagcacttc cttagtgagg actgagcctt 5520 gtgtcatcaa gattactgga gaatcaatca cagtgttggc ctgcaaatta gacgcagaaa 5580 ctatcagagc cattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agctagcaca acacaggcca cagggtcaac tacctcaact 5700 accacgaaaa ctgcaggcgc aactcctgcc acagcttcag gactgttcac catcccggat 5760 ggggatttct ttagtacagc ccgtgccata gtagccagca atgccgttgc aacaaatgag 5820 gacctcagta agattgaggc tatttggaag gatatgaagg tgcctacaga cactatggca 5880 caggctgctt gggacttagt cagacactgt gctgatgtgg gctcatctgc tcaaacagaa 5940 atgatagata caggtcccta ttccaacggc atcagcagag ctagactggc agcagcgatc 6000 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtggt atggaactgg 6060 atgttgacta acaacagtcc acctgctaac tggcaagcac aaggtttcaa gcctgagcac 6120 aaattcgctg cattcgactt cttcaatgga gtcactaacc cagctgccat catgcccaaa 6180 gaggggctca tccggccacc gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt 6240 gttaagatta cgaaggccag ggcacaatcg aacgactttg ccagcttgga tgcagctgtc 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct accaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //