ID   AB194808; SV 1; linear; genomic RNA; STD; VRL; 2091 BP.
XX
AC   AB194808;
XX
DT   12-MAY-2005 (Rel. 83, Created)
DT   30-MAY-2020 (Rel. 144, Last updated, Version 3)
XX
DE   Cassia yellow blotch virus RNA3, complete sequence.
XX
KW   .
XX
OS   Cassia yellow blotch virus
OC   Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC   Martellivirales; Bromoviridae; Bromovirus.
XX
RN   [1]
RP   1-2091
RA   Mise K.;
RT   ;
RL   Submitted (11-NOV-2004) to the INSDC.
RL   Contact:Kazuyuki Mise Kyoto University, Laboratory of Plant Pathology,
RL   Graduate School of Agriculture; Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto
RL   606-8502, Japan
XX
RN   [2]
RX   DOI; 10.1007/s00705-005-0500-6.
RX   PUBMED; 15770356.
RA   Iwahashi F., Fujisaki K., Kaido M., Okuno T., Mise K.;
RT   "Synthesis of infectious in vitro transcripts from Cassia yellow blotch
RT   bromovirus cDNA clones and a reassortment analysis with other bromoviruses
RT   in protoplasts";
RL   Arch. Virol. 150(7):1301-1314(2005).
XX
DR   MD5; 1f4b32f5166a9303c230aa4a29c5ec88.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2091
FT                   /organism="Cassia yellow blotch virus"
FT                   /segment="RNA3"
FT                   /strain="KU1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:300879"
FT   5'UTR           1..108
FT   CDS             109..1029
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q50L54"
FT                   /protein_id="BAD98318.1"
FT                   /translation="MSSVFTPFSGSSRTVAIGQQTGGVDQSSLLSTLFSEESRDQFAKE
FT                   CKLGLYTNLRSSQRFNYVDLVPQAHGSKVLNLFRTEYEKGRIPSSGVLSIPRVLVFLVR
FT                   TSSASEGGSVTLRLVDLKGASNLDGLEAVDGTQEATVPISDLPAIVCFSPSYDCPMEML
FT                   GNRPRCFGLVSQLDGVSSSGTTVMSHAYWSASFRTKPNNYVRHVPKFVYVTPFERLVKL
FT                   NRKQLKNYIKGISNQSIDFGYLMGKTVDRVQEVVDITASEEDKESLTSDAVDGGDQKVV
FT                   KTERSATAKSVAGLPVSRNTLIFNR"
FT   misc_feature    1030..1270
FT                   /note="intercistronic region"
FT   CDS             1271..1849
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q50L53"
FT                   /db_xref="InterPro:IPR002009"
FT                   /db_xref="UniProtKB/TrEMBL:Q50L53"
FT                   /protein_id="BAD98319.1"
FT                   /translation="MSQTGTGKSTRAQRRKIAREARKALKLSNPRPVVLEPVSSGIGRP
FT                   LRARQGCVISAWSSSNSACDAKTTSQISITLPTELSSERGKLLKVNRVMLWMGLLPSVS
FT                   GTVKSCVTPTQSTPAAAFQSALAVADSSKDVGVAFYAEAFKGLTLEQLTNDLSIYLYSA
FT                   EALSAGDVVVHLEVEHDEPVLNRFFTGLL"
FT   3'UTR           1850..2091
XX
SQ   Sequence 2091 BP; 550 A; 454 C; 528 G; 559 T; 0 other;
     gtaaaacttc taacaactga ctactcgcac tttacccaga aaagtgtgtg ttagaataca        60
     tcgttttttc tcactcaaat tggtagtctt gagtgattgt agctaacgat gtctagtgtt       120
     tttaccccgt tttcaggttc ctcgcgaacg gtggcgattg gacaacaaac tggaggtgtg       180
     gatcagagct ctctgttgtc gacccttttt tcagaagagt ctcgagatca attcgctaag       240
     gagtgcaaac ttggtttgta cacaaactta cgatcatccc agaggtttaa ttatgttgat       300
     ctagtccccc aagcccacgg ttcgaaagtc ctcaacctgt tcagaacgga atatgaaaag       360
     ggtaggattc cctcgagcgg cgttcttagc attcccaggg tactcgtttt tctcgttaga       420
     acttcttctg cgagtgaagg cggtagtgtc accttgagat tggtcgatct caaaggtgct       480
     tcgaacctcg acggtttaga agctgtggac ggtacgcagg aggcgaccgt accgatcagt       540
     gatttaccgg cgattgtttg tttttcaccg tcttacgatt gcccaatgga aatgctcgga       600
     aacagacccc gttgttttgg gttggtctcc caattagacg gggtgtctag cagcggtacg       660
     acagtaatga gtcatgccta ttggtcagcg agctttagga caaagccaaa caattatgtt       720
     aggcacgtcc ctaagttcgt ttatgttact ccctttgaac gactggtgaa attgaaccgg       780
     aagcaattga aaaattacat caagggtatt tcaaaccagt ctatcgactt cggttacctt       840
     atgggtaaga ccgttgatcg agttcaagag gttgtcgata taactgctag cgaggaggac       900
     aaggaatcac taacatctga cgccgttgac ggtggcgatc agaaagtagt caagaccgaa       960
     aggtccgcaa ccgctaaatc cgtcgccggg ttgccagtat cccggaacac gctaattttt      1020
     aatagatagc tggggaaacg cgaaagcgga tgaagatcgg gaggagagtt tggtacagcc      1080
     gtttgcagca cggggcgatc taagctttgg gttcaattcc cttacgcagt gacccctagg      1140
     tgtgaggtcc tatcaggcca tagcccgatt gtagtctgtg tgtagtgtta aaaaaaaaaa      1200
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aatctatgtt ttcaattagc gtaatttaat      1260
     taaaactgac atgtcacaga ctggcacagg caaatcaacc cgcgctcagc ggaggaagat      1320
     agcgagggaa gctcggaaag ctttgaaatt atccaaccct cggcctgttg tgttagagcc      1380
     ggtgtcttca gggataggta ggcccctgag ggctaggcaa ggttgcgtaa taagtgcgtg      1440
     gagctcctct aattcagctt gtgatgctaa aaccacgagt caaatctcca tcactctacc      1500
     cacggaactt tcatctgaga ggggtaagct tctgaaagtg aaccgtgtta tgctctggat      1560
     gggcctgtta ccttcggttt caggcacagt gaagagttgt gttactccca ctcagtccac      1620
     tccggctgcg gctttccaaa gtgctttggc cgtggccgat tcgtcgaaag acgttggtgt      1680
     ggcattctat gcagaggcct ttaaagggct gacgctggaa cagttgacga atgacctcag      1740
     tatctatttg tatagcgctg aggctttgtc ggctggtgat gtggtggttc accttgaggt      1800
     ggaacatgac gagcctgtat taaataggtt cttcacgggt ctgctctaag cctcccgctg      1860
     tgaagcgtta aatcaggttg gtgtcctaaa caccagttct aacggtttct ttaaaccgta      1920
     gtcgtggttg acacgcttga ttcttacaag aatcaaagtt gcctttgaga gttactcctt      1980
     gctctcttca gaagttctct accgagaacg tgcagtggct gtcatagaca gccttcagac      2040
     tgcgggcaac gtcagttcca taaggaactg ataatctcca aaaggagacc a               2091
//