ID AB194807; SV 2; linear; genomic RNA; STD; VRL; 2721 BP. XX AC AB194807; XX DT 12-MAY-2005 (Rel. 83, Created) DT 30-MAY-2020 (Rel. 144, Last updated, Version 4) XX DE Cassia yellow blotch virus RNA2, complete sequence. XX KW . XX OS Cassia yellow blotch virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Martellivirales; Bromoviridae; Bromovirus. XX RN [1] RP 1-2721 RA Mise K.; RT ; RL Submitted (11-NOV-2004) to the INSDC. RL Contact:Kazuyuki Mise Kyoto University, Laboratory of Plant Pathology, RL Graduate School of Agriculture; Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto RL 606-8502, Japan XX RN [2] RX DOI; 10.1007/s00705-005-0500-6. RX PUBMED; 15770356. RA Iwahashi F., Fujisaki K., Kaido M., Okuno T., Mise K.; RT "Synthesis of infectious in vitro transcripts from Cassia yellow blotch RT bromovirus cDNA clones and a reassortment analysis with other bromoviruses RT in protoplasts"; RL Arch. Virol. 150(7):1301-1314(2005). XX DR MD5; c8b8d5d0878b58e19d04208154e076d6. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2721 FT /organism="Cassia yellow blotch virus" FT /segment="RNA2" FT /strain="KU1" FT /mol_type="genomic RNA" FT /db_xref="taxon:300879" FT 5'UTR 1..79 FT CDS 80..2479 FT /codon_start=1 FT /transl_table=1 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:Q50L55" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="UniProtKB/TrEMBL:Q50L55" FT /protein_id="BAD98317.2" FT /translation="MSRFINGEEYEIPSFQWLIDESLERLGNLPAEISTDVVDEPRVEI FT TAEGTLDSFLHAVKPLVISGEYQPPFDQARWASCCQQVYELNEAFGHKGLIPPPEMARM FT LYLDIEGSFINEEECDDWMPVDTDDGYLDYTSKKDLQTVNTEENDLAEMPELEECSDSS FT KSDVVEFTLADRFQVTSGEFFDLENSNYQLTLDLQNPMMQMVEGLEDTLPETEPDEQLT FT LAPRFTERVSCEALEGAGHRMLPTHAYFDDSHMQALEEIADYNLDFERIKISQSGVDWY FT KDPDKYYEPKMQIGSFSRRVGTQKTVLTALKKRNADVPELADNVDIQSVAAEVSQRFFE FT TFLNPGCENLFRGDLNVMAKAFEYEKKWSKHKDLVDVNVMSERNLQSYKHMIKTDVKPV FT INDTLHLERAVPATITFHGKAVTSAWSPFFTSCFENLILHLRSRFIVPVGKLSSLEIKN FT MVLNDKYFLEADLSKFDKSQGELHLEFQREILLKLGFPAPLANWWSDFHRQSYLSDKNA FT GVGIPVSFQRRTGDAFTYFGNTLVTMSMMAYCYDLSKMEYCFFSGDDSLLISREKHSFE FT PLLFQSLFNMEIKVMEPSLPYICSKYLLETTGGRVVSVPDPVREIQRMSKRKIVKDPSV FT LRAHYVSFCDRMKFLKKLDEKSLSLLCKYCCLRQRKPDIEMDVRIAVSACGYYAENFAR FT YAELFVTNGAEVFMKKNPCKPELPERSDGSWFRDWRNTVFPRLADSYVRFFGRYSVDHT FT GDYESVVKSCKAKAVKKLWSDSYKAALDRRDDLNEKIRKDLASFEA" FT 3'UTR 2480..2721 XX SQ Sequence 2721 BP; 712 A; 546 C; 658 G; 805 T; 0 other; gtaaaccaca agaacgaggt tcaattcctt gtagacttac ggtttcaatt gtgttgtgtt 60 tattcaacat ttaccaatta tgtctcgatt tattaacggt gaagagtacg aaattcccag 120 ttttcagtgg ttgattgatg aatccttaga gcgactaggg aaccttcctg ccgaaatttc 180 gactgatgtc gttgatgaac cgagagtaga gataacggca gagggaaccc ttgacagttt 240 cttgcatgct gtcaagcctt tggtgatttc aggtgaatat caacccccct tcgaccaagc 300 acgctgggcc tcttgctgcc agcaggtgta tgagcttaat gaagcctttg gccacaaagg 360 cttgattcca cctcctgaga tggcccgcat gttatatttg gatatcgaag gttccttcat 420 taatgaagag gagtgtgatg actggatgcc agttgacaca gatgatggtt atcttgatta 480 cactagtaag aaagatctcc agactgtgaa tactgaagaa aatgatttgg ctgagatgcc 540 cgagctggag gaatgcagcg acagctcaaa gtccgatgtg gtggagttca ccctggcgga 600 cagattccag gttacaagcg gagagttttt tgatcttgaa aactctaact accaacttac 660 gcttgatctg cagaatccca tgatgcagat ggtcgagggt cttgaagata ctctccccga 720 gactgaacct gatgaacagc tcaccttggc tcctcggttt accgagaggg taagttgtga 780 agctttggaa ggtgccggac accgaatgct acccactcat gcatattttg acgacagtca 840 tatgcaggct ctggaggaga tagcagatta caatcttgat ttcgagagga ttaagatctc 900 ccagagtggt gtcgattggt acaaagatcc tgacaagtat tacgaaccga agatgcaaat 960 cggttcgttc tcccggcgag tggggactca gaagactgtg ttaacagccc tcaagaaaag 1020 gaatgctgat gttcctgagt tggctgataa tgttgatatc cagtctgtgg ccgcggaggt 1080 aagccagagg ttttttgaga cctttttaaa ccctggctgt gaaaatctat tcagaggtga 1140 cttgaatgtc atggccaaag cctttgagta tgagaaaaaa tggtctaagc acaaagatct 1200 tgttgatgtg aatgttatgt ctgaaagaaa tttgcagagt tataaacata tgataaagac 1260 cgatgttaag ccggttatca atgacactct gcatcttgag cgagctgtgc cggctaccat 1320 tacctttcat ggtaaggctg taaccagtgc ctggtcgccc ttcttcacat catgttttga 1380 aaatctcatc ttgcatctga gatcaagatt cattgtgcca gtgggaaaac tatcgtccct 1440 tgaaattaag aacatggttc ttaatgataa gtacttcctt gaggcggatc ttagcaaatt 1500 cgataagtct caaggggagt tacatctgga atttcaaagg gagatacttt taaagcttgg 1560 ttttcctgcg cccttggcta attggtggtc tgatttccac cgacagtcct atctctccga 1620 caaaaatgct ggtgtcggaa ttcctgtctc atttcagcgt cgtactggtg acgcttttac 1680 gtatttcggg aacactctgg tgacaatgtc tatgatggct tactgttatg acttgtcgaa 1740 gatggaatat tgcttcttct ctggagacga ttctctactc atctctcgag agaaacattc 1800 cttcgagcca ttgttgtttc aatctctttt caacatggag attaaagtca tggagcccag 1860 tctgccttac atctgtagta aatatctgct ggaaactaca ggtgggcgtg tggtatcggt 1920 tcctgacccc gtaagagaaa tacagcgtat gagcaagagg aagattgtga aagatccctc 1980 agtgttacga gctcattacg tttctttttg tgacaggatg aaatttttaa agaagctcga 2040 tgagaagtct ttgagcttgc tttgcaagta ctgctgttta cgtcagcgta aaccggatat 2100 tgagatggac gtccgaatag ccgtttcggc ttgcggttac tatgcagaga atttcgccag 2160 atatgccgag ttgttcgtga ccaacggggc tgaggttttt atgaagaaaa acccctgtaa 2220 accagaactt cccgagagat ctgatggaag ttggttcaga gactggcgta atactgtttt 2280 tcctcgtctc gcagattcat atgtcaggtt ttttggtcgg tattctgtcg atcataccgg 2340 tgactatgag tctgtggtta aatcatgcaa ggctaaggcg gttaagaagt tgtggtctga 2400 ttcttataaa gccgctttag atagacgaga tgacctgaat gaaaagattc gtaaggatct 2460 ggcttctttt gaggcctaac cttattttcc tttctttctt gtttggttgg tgtcctaaac 2520 accagttcta acagttttct ttaaactgta gtcgtggctg acacgctcaa ctcttacaag 2580 agttgaagtt gcctttgaga gttactcctt gctctcttcg gaagttcttt aacgagaacg 2640 tgcagtggct gtcatagaca gcttttagac tgcgggcaac gtcagttcca taaggaactg 2700 ataatctcca aaaggagacc a 2721 //