ID AB194806; SV 2; linear; genomic RNA; STD; VRL; 3176 BP. XX AC AB194806; XX DT 12-MAY-2005 (Rel. 83, Created) DT 30-MAY-2020 (Rel. 144, Last updated, Version 4) XX DE Cassia yellow blotch virus RNA1, complete sequence. XX KW . XX OS Cassia yellow blotch virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Martellivirales; Bromoviridae; Bromovirus. XX RN [1] RP 1-3176 RA Mise K.; RT ; RL Submitted (11-NOV-2004) to the INSDC. RL Contact:Kazuyuki Mise Kyoto University, Laboratory of Plant Pathology, RL Graduate School of Agriculture; Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto RL 606-8502, Japan XX RN [2] RX DOI; 10.1007/s00705-005-0500-6. RX PUBMED; 15770356. RA Iwahashi F., Fujisaki K., Kaido M., Okuno T., Mise K.; RT "Synthesis of infectious in vitro transcripts from Cassia yellow blotch RT bromovirus cDNA clones and a reassortment analysis with other bromoviruses RT in protoplasts"; RL Arch. Virol. 150(7):1301-1314(2005). XX DR MD5; 3aa6be3a504775b6918677b4bd6a2f06. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3176 FT /organism="Cassia yellow blotch virus" FT /segment="RNA1" FT /strain="KU1" FT /mol_type="genomic RNA" FT /db_xref="taxon:300879" FT 5'UTR 1..72 FT CDS 73..2940 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q50L56" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q50L56" FT /protein_id="BAD98316.2" FT /translation="MASLIDLNSLISKKGAESRGVLDIVDNQATQQVLSQVEHLRRSKK FT INIRNKLAPSEVEAFKARYGGAFDLNLTQEYNAPHSLAGALRIAEHYDCMDSFPPEDRI FT IDFGGSWWHHYARKDFRVHCCCPILGVRDAARHEERMCRLRRLLQSSDYEETPDFCLNK FT ARDCNVQADWAICIHGGYDMGFKDLCHSMRSHGVRILKGTIMFDGAMLFDESGFLPLLK FT CRWKKEKGFVKFDFENESTLSYIHSWDKLGSFFTESVYRIGSTTYLLERELIKCNIMTY FT KIIATDLPCPKETLRHCVWFENLSQYVAVNVPVDFNLCRWRRVRVAVSTVREVEEISFR FT CFKENKEWTENMKAVASVLSAKSSTVIINGQAIMAGERLSIDDYHLVAFALTLNLYMKY FT ENLRSFHEGLKWGGWWNHFLTRFWWRGDVPTDSRPWLVNLLGQWFPRLRLDTYAESCEF FT IAKISDVAEFECDSVPSGFLQRFFHSEADLQRRIQVELDTVKDSRDKKKKEKEKASKEP FT KSEEPVEEVFEEAPDDFIRDDVKPATDGGTVCVDKSTVSRELSLKEYSNYCQRLHENSL FT SNLRRIWLLAGGKGTVISNKSMLETYHRVDCLINAHIAGSGWLYPTEQEYTIGYNDDGL FT GPKQAGETFIVDKSCVISNNASLAKASQGLKAPKCSVTLCDGVAGCGKTTAIKNTFSIE FT KDIIVTANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLPSCQRLLIDEAGLLH FT FGQVLAVAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDV FT VAAVVKMKRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHKFYQTMTQSAK FT AALMTRAKDFQLPKSWIEANIKTAHESQGISVDHVVHVRDKSTKCDLYKDEEYCLVAMT FT RHKKTFEYCYNGELAGDLLLHSIRS" FT 3'UTR 2941..3176 XX SQ Sequence 3176 BP; 864 A; 641 C; 782 G; 889 T; 0 other; gtaagaccac gagaacgagg ttcaattcct tgtcgactca cggttttaat caacttttgt 60 taaagtttta aaatggcttc tttaattgat ttgaactctc tcatatccaa aaagggcgct 120 gagtccagag gcgtcctaga tattgtggac aaccaggcca ctcaacaagt gttaagtcag 180 gttgaacacc ttaggagatc gaagaaaatc aatatacgta ataagttggc accgagtgaa 240 gtagaggcat tcaaagctcg ttatggtggc gcatttgatc ttaatttgac tcaagaatac 300 aatgcacccc atagtctggc tggggctttg agaattgccg aacactatga ttgcatggac 360 tcattcccac ccgaagacag gatcatagat tttggtgggt cctggtggca tcattatgcc 420 aggaaggatt tcagagttca ctgttgctgt cccattttgg gggtaagaga cgctgcgcgt 480 catgaagagc gcatgtgtcg gctgagaaga ctcttgcaaa gttccgatta cgaggaaacg 540 cccgatttct gcttgaataa agctagagat tgtaacgtcc aggctgactg ggcgatatgt 600 attcacggtg gttatgacat gggtttcaaa gacctgtgtc actccatgcg tagtcatggc 660 gttaggatcc taaaaggaac tattatgttt gatggggcca tgttgtttga tgaatccggg 720 tttctacccc tccttaaatg ccgatggaaa aaggagaagg gttttgtaaa atttgatttt 780 gagaatgaga gcactttgtc gtatatccat tcctgggata aacttggttc tttcttcacg 840 gagtcggtct accgtatcgg tagtaccact tatctcctag agagagaact gataaagtgc 900 aacatcatga cttacaagat catagccacg gatttgccct gtcctaaaga gactctcagg 960 cactgtgtgt ggtttgaaaa cctatcacag tacgttgcag tgaacgtccc cgttgatttc 1020 aatctgtgca gatggcgtcg tgtcagagta gccgtttcga cggtgagaga ggttgaggag 1080 atatcctttc gttgtttcaa agaaaacaaa gaatggactg agaacatgaa ggctgtggct 1140 tctgtgctct cagctaagtc ctcaacagta attatcaatg gtcaggccat catggctggt 1200 gaacgcttga gcattgatga ttaccatctc gtagcctttg ctctgaccct gaatctgtac 1260 atgaaatatg aaaacttgag atcttttcat gagggtctta agtggggagg atggtggaac 1320 cattttttga ccagattttg gtggcgagga gacgtcccaa ctgattctag accttggctg 1380 gtgaatcttc ttggtcaatg gtttccacgt ttaaggcttg atacctatgc tgagtcctgt 1440 gaattcatag cgaaaatctc tgatgtagcc gagtttgaat gtgattctgt tccatccggc 1500 tttctccaga gatttttcca ctcagaggcg gaccttcaac gccgtatcca ggttgaactt 1560 gacactgtca aagattcccg ggataaaaag aagaaggaaa aggagaaggc ctccaaagag 1620 ccaaagtccg aagagcccgt ggaggaagtc tttgaagagg ctccggacga tttcatcaga 1680 gatgatgtaa aacccgctac tgatggtggg acggtgtgtg ttgataaatc taccgtatcg 1740 agagagttga gtttgaaaga gtactccaat tattgccaac gtctccatga aaactcactc 1800 tcaaatcttc gtcgaatctg gcttttggcc ggaggtaagg gcacagtcat ctctaataag 1860 tccatgttgg agacgtatca tagagttgac tgtttgataa atgctcatat tgccggttcg 1920 ggttggctgt acccaactga gcaggagtat accatcggtt ataatgacga tggtttggga 1980 cctaaacagg caggggaaac ctttattgtt gacaaatcct gtgtcatatc aaacaatgcc 2040 agtttagcca aggcaagcca aggcttgaaa gctcccaaat gttctgtgac cctttgcgac 2100 ggagtggctg gatgtggtaa gaccactgct ataaagaaca cgttcagcat tgaaaaggat 2160 attattgtta cagcaaacaa aaaatcagct tcggacgttc gagaggcaat cttccctgaa 2220 gatcctgagg gagagatagc ctcgaagttt attagaacgg ctgattccgc tctcatgcac 2280 ggacttccgt catgtcagcg gttgttgatc gatgaagcgg gactacttca tttcggtcaa 2340 gtcctggcag tggcagctat ctgtaaggca acggaagttt tggctttcgg tgattctgaa 2400 cagattagct ttaaatcccg tgacaacaca ttccgtttcc gtcatcaaaa gataatatat 2460 gacaggaggg atgtggttac cgtgacgtat cgctgtcctc aggatgtcgt cgccgccgtt 2520 gtgaaaatga aacggcgaac aggtaagttg cgtgagtcca aatattcctc ttggatttcc 2580 aggtctaaag ttgagaaaag tctttcggca agaccgatct ctagcttgaa tcaaattgtc 2640 attgaacctc acaagttcta ccagacaatg actcagtcgg cgaaagccgc tctgatgacg 2700 agggccaagg atttccaatt accaaaaagt tggattgaag cgaacattaa gactgctcat 2760 gagtctcaag gcatctctgt tgatcatgtc gtacatgttc gtgataagtc cactaagtgt 2820 gatctttata aagatgagga atactgcctt gttgctatga cgaggcataa gaaaactttc 2880 gaatattgtt ataatggtga gttagctggt gacttactat tacacagtat tcgttcatag 2940 ccgtctatcg aacgtaaatc gatagtttgg cgcttaagtc aagttctaac ggtttcttta 3000 aaccgtaatc gtggttgaca cgtcttagtt ctacagaact atgagttgcc cttgagagtt 3060 actccttgct ctcttcggaa gtttcttcgg aaacgtgcag tggctgtcat agacagcttt 3120 taggctgcgg gcaacgtcag ttccataagg aactgataat ctccaaaagg agacca 3176 //