ID AB193726; SV 1; linear; genomic RNA; STD; VRL; 9035 BP. XX AC AB193726; XX DT 29-OCT-2005 (Rel. 85, Created) DT 04-OCT-2009 (Rel. 102, Last updated, Version 5) XX DE Aurantiochytrium single-stranded RNA virus genomic RNA, complete genome. XX KW . XX OS Aurantiochytrium single-stranded RNA virus 01 OC Viruses; Riboviria; Picornavirales; Marnaviridae; Labyrnavirus. XX RN [1] RP 1-9035 RA Takao Y., Nagasaki K., Mise K., Okuno T., Honda D.; RT ; RL Submitted (26-OCT-2004) to the INSDC. RL Contact:Daiske Honda Konan University, Department of Biology, Faculty of RL Science; 8-9-1, Okamoto, Higashinada, Kobe, Hyogo 658-8501, Japan XX RN [2] RX DOI; 10.1099/vir.0.81204-0. RX PUBMED; 16476996. RA Takao Y., Mise K., Nagasaki K., Okuno T., Honda D.; RT "Complete nucleotide sequence and genome organization of a single-stranded RT RNA virus infecting the marine fungoid protist Schizochytrium sp"; RL J. Gen. Virol. 87(Pt 3):723-733(2006). XX RN [3] RX DOI; 10.1128/AEM.71.8.4516-4522.2005. RX PUBMED; 16085844. RA Takao Y., Nagasaki K., Mise K., Okuno T., Honda D.; RT "Isolation and characterization of a novel single-stranded RNA Virus RT infectious to a marine fungoid protist, Schizochytrium sp. RT (Thraustochytriaceae, Labyrinthulea)"; RL Appl. Environ. Microbiol. 71(8):4516-4522(2005). XX DR MD5; e1958bd231cfa14e80c52e73e6866914. DR EuropePMC; PMC1317472; 16332886. DR EuropePMC; PMC4512727; 26203654. XX FH Key Location/Qualifiers FH FT source 1..9035 FT /organism="Aurantiochytrium single-stranded RNA virus 01" FT /lab_host="Schizochytrium sp. NIBH N1-27" FT /mol_type="genomic RNA" FT /country="Japan:Hyogo,Kobe, Kobe Harbor" FT /note="SssRNAV" FT /note="positive sense single-stranded RNA genome" FT /note="synonym: Schizochytrium single-stranded RNA virus" FT /db_xref="taxon:674971" FT CDS 627..5240 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:Q33DY4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q33DY4" FT /protein_id="BAE47143.1" FT /translation="MDNFQSASHVALGRETAPFSNVKVNYADFLLRLQQSAEVVDLSSL FT KELFTNVFSDVTEEGTNFALSLMSLFYRLYKLDSLTDLFFAALDFLKSVCGVNYLVDSA FT QFAFDFLKTTVTNLYNKLLVAPATTESAAVDVLRNLRSNMSLVLNSDIVSAIRDFVLTL FT VTFRVFNKDTAFRITQTLGRARPATAVELAEICLSTAISVLNFSDQLMSGASLSEIFCD FT KNPVAAFTSLADELDSLRALTYSGIPEDGKVCRREYLSRVIKCVKDGEALMEDLPRNAP FT QRPQVQRSLKTVRLIKSDFLNMMTGESRPMPFCVCLVGMPGIGKGLLVDYVSMIWSHVK FT GREFDSSHVYHRQATEEYWSGYEPASKPIIHYSEPGSLNRNIAKARGDPVMSEFLSVAD FT NQPFMCNMADVDSKGTVFACPELIVMDTNEPTMNLDVLVNNPAAVRRRILYITPTVKPE FT FLATGTCRMDQAKSLASDTPKLDRWTFTVHSMEPKDTKTSHTVMHLQGASIYELSDYLR FT ARATKHVEQQAARCDLLSGENISMYLTPTTPVEAVVESSDLSPVHTEELPRSVAFALAY FT QAFFINLEHMFWEWICALGPLVYWTIVLIFEAIFALILWFHPQNFFLKSFSLAMWRGRL FT KHTSDKHSRSWNHFKATMGLENTYTPRIQPDYKVARYVAVLGGLLLLVKSYRAFSLFTE FT GSVLSTQKNWSEEEVDAALERVQRQSKCDMPPPREKRGNGVDWDDTDRPIPVPIDNQEQ FT KNEPDKVVASVMKNLRVMQIAGTRTIETRILGVCEDYALVNRHSICHDKNGVWEATIRV FT APDHEIGVIKCTLDSREFVQVDEDVWLIRIRGARFKDIKSYFASDYVTPPAYGSDGFIG FT HNPVRVKSYAPITAQDKNWGPVHVSRPLAYEWPSHAVGLCGTPLILKYSNAFGIVGLHI FT AGSNGHLAFSQAIRFPDVAKALNTLSATTCSLGVNSEGRLRLPKKISGLGPVTDRSPLR FT WEQVAGLSVYGGLVGYQAMKLGKSKLRSSGFIRHAEELTGVSPFKDGKPLYGAPPFSPG FT FNPNTGEYQGPYNHFVKKCGVVKKSLHPEILRQTIDTVREHILSGLKAKGVTKIAPVTL FT EVAQNGHPEDFYMRAMKPSTSGGWAWPGSKKKYSEQCSLDFKSDAYMPLYDVKEQVVEQ FT LLAYERGEDALPLLGAQLKDEPRAYKKIVDRKTRVFCMSPYESTLVNRMYLMPFYTLMV FT EHGDIFRTAIGINMHSQDVGDLVTRMTDFSDQFMEGDYGGYDTSMPYDIGLAANTVVYQ FT VCQDLGYDSHALQMVRGILSDNLYPTVVMRGDVFAAPALQPSGKYATAEDNSLRGLILM FT VYAWISECTDIGDQCTGRARTTQFQPEDFFTQVLPVIYGDDMLAGVKPVAQQFYNNNTY FT QTFCKEVYGLEFTNAQKTAEMANFLEWDDTSFLKRSFVFREDLQVWVAQLELASIMKSI FT CYYLPSKSVNEDDQLIDSCVSAMRELFFHLPKEEFEVRRTRFAEVCADLFNKDATDVLK FT VFPSFDCIRQSLYGVPT" FT misc_feature 4176..5006 FT /note="putative RNA dependent RNA polymerase" FT polyA_site 9018..9035 XX SQ Sequence 9035 BP; 2190 A; 2358 C; 2134 G; 2353 T; 0 other; agtaaaaagg tgtgcggggt aatcccccgc acgcctttgt ttgtagaatg cacttataca 60 gattccgctc ttgccgttaa ttataccgct cttgccgcaa tctgtcacca gatccgccat 120 ttccgctata aacgccattt acgcaatcta aacttgtttt ctctttcact aggttatgct 180 cacctaatta ctcaaatttg ctacaccacc cacagcactt gattagtcac cacttgctgc 240 ttgtattata tagactcttt tgtacacatt taatgtacca tatttattta ccaattatag 300 aagaaaaata aaaatcaaat aaccagaaaa taaaaatatt tatagaccca caatgtcttt 360 aaaattggac tcaactctat ttctttgccg atttagactt gtttgaacct ttattccgaa 420 ctcctcttgt atatacgagg ctagtaaggt aaagtgatat gccctggacg catgtatcgt 480 cctgtttgtg agtaaagtat aactctctcc ctaaaagttt ttacgtttgt cagggataag 540 accgctagtg atgtatgcca cggacacaga agtcctatat gcatttaatt ccactagttc 600 ataacgtacc cccccatctt aacaccatgg ataactttca gtctgcgtca cacgtagcgc 660 ttggccgcga aacagccccg tttagcaacg ttaaagttaa ctacgcagat tttctgctcc 720 ggcttcagca atccgctgaa gttgttgatc tctcctctct gaaggagctt ttcacgaacg 780 tcttttctga cgtgaccgag gaaggtacta actttgctct ctcgcttatg tcgcttttct 840 atcgacttta taagcttgac agcttgactg accttttctt tgccgcactt gattttctca 900 agtcggtttg cggtgtcaac taccttgttg attccgccca gttcgctttc gactttctta 960 agacgactgt cacgaacctg tacaataaac tcctcgtcgc acccgcgacg actgagtccg 1020 cagccgttga tgtgctgcgc aaccttcgct ctaacatgag ccttgtcctc aatagcgata 1080 ttgtttccgc tattagggac tttgtactta cacttgtaac atttagggtg ttcaacaagg 1140 acaccgcctt tcgtattaca cagactcttg gacgagctcg acctgctact gccgtcgaac 1200 tcgctgagat ctgtcttagt actgccattt ctgtgctgaa cttttctgat cagctcatgt 1260 ctggcgcgag tctctctgag atcttctgcg acaaaaaccc tgtcgccgcc tttacgtcgc 1320 ttgccgacga attggactca ctcagagctc tcacttactc aggcattccc gaagacggga 1380 aagtctgccg tcgcgaatat ctttcacgcg ttattaaatg tgtgaaggat ggagaggccc 1440 tcatggagga cctccctcgc aacgcgcccc aaagacctca agttcaaagg tctctcaaga 1500 cggttcgcct catcaagtca gattttctca acatgatgac tggtgaatcg cgccccatgc 1560 cattttgtgt atgcctcgta ggcatgccgg gtattgggaa gggccttctc gtggattacg 1620 tatccatgat ttggtcgcac gtcaagggtc gagaattcga ctcctctcac gtgtatcacc 1680 gccaggctac agaagagtac tggtccggat atgaaccggc ttccaagccg atcattcatt 1740 actccgagcc gggctctctc aaccgcaaca tcgcgaaagc ccgtggtgac cctgtgatgt 1800 ccgagtttct ctccgtcgca gacaatcagc cgttcatgtg taacatggct gacgttgact 1860 ctaagggcac tgtttttgca tgccccgaac tcattgtcat ggacacgaat gaaccaacga 1920 tgaaccttga cgtacttgta aacaaccccg cggctgtacg tcgccgcatt ttgtacatta 1980 ctccgactgt aaagccggaa ttccttgcca ctggcacttg ccggatggat caagccaaat 2040 ctttggcctc tgatactcct aagcttgatc ggtggacttt cacagtccac tcgatggagc 2100 ctaaggacac caagacttct cacaccgtca tgcaccttca aggtgcttcg atctacgagt 2160 tgtctgatta cctccgcgct cgtgctacga agcacgttga acagcaggcc gctcgctgcg 2220 acctgctttc cggagagaac atttctatgt atctcactcc taccacacct gtggaagctg 2280 tggtggagtc atctgatctc tcccctgtac atactgagga gcttcctcgc tccgttgcat 2340 ttgcacttgc ctaccaagcg tttttcatca acctggaaca tatgttctgg gagtggattt 2400 gcgctcttgg gcccctcgtc tattggacga ttgtacttat cttcgaggcg atttttgccc 2460 tcatcctgtg gtttcatccg cagaattttt ttttgaagag cttttctctc gccatgtggc 2520 ggggaagact caaacacacg agtgataaac actcccgtag ctggaaccat tttaaggcta 2580 caatgggttt ggaaaacact tacacacccc gcattcaacc cgattacaag gttgcacggt 2640 acgtagctgt cctgggagga cttctccttc ttgtgaagag ctaccgtgcc ttttccctct 2700 ttactgaggg atcggtcctt tccacccaga agaactggag tgaggaagaa gttgatgctg 2760 ctcttgagcg cgtacagcgc cagagcaagt gtgacatgcc accgccacgt gaaaagcgtg 2820 gtaatggtgt tgactgggac gataccgatc gtcctattcc tgttcctatc gacaaccagg 2880 agcagaagaa cgagcccgac aaggtcgtgg cttccgttat gaagaacctt cgtgttatgc 2940 aaatcgctgg cacgcgcacg atcgaaacgc gcatcttagg tgtgtgtgaa gattacgcgc 3000 ttgtcaatcg acattcgatt tgtcatgaca agaatggtgt ttgggaagca accattcgtg 3060 ttgctcccga ccacgagatc ggcgtcatca aatgtacgct cgattcacgt gaattcgttc 3120 aggtggacga agatgtctgg ctgatccgca tccgcggagc acgcttcaag gacatcaagt 3180 cttattttgc gtccgattat gtgacgcctc ctgcttatgg cagtgacggc ttcatcggac 3240 acaaccccgt ccgtgtcaag tcttatgcgc ctattacggc gcaggacaag aactggggac 3300 cagttcacgt ttctcgacca ctcgcttatg agtggccttc ccacgcagta ggattgtgtg 3360 gaacccctct gatcctgaag tattcaaatg ctttcgggat tgtaggcctg cacattgcgg 3420 gctccaatgg tcatcttgct ttttcgcaag ccatccgctt tccggatgtc gcgaaggcac 3480 tcaacacgct ttcggctacc acttgttcac ttggtgtgaa cagtgagggc cgtctgcgtt 3540 tgcccaagaa gatctctgga cttggtcccg ttactgaccg ctccccactc cggtgggaac 3600 aggtggccgg cctctccgtt tatggcggat tggttggtta tcaagcgatg aagcttggaa 3660 agtccaagct ccgcagcagc ggtttcattc gtcacgctga agagctgacg ggtgtctcac 3720 ctttcaagga cggcaagccc ctttacggag ctccgccatt ctcacccggg tttaacccga 3780 acactggtga gtaccaggga ccctacaacc acttcgtaaa gaagtgtggg gttgtcaaga 3840 agagtctcca ccctgagatt cttcgccaga ccattgacac cgttcgagag catatcctct 3900 ccggtctcaa ggccaagggc gtcaccaaga ttgcgcccgt caccctcgag gttgcccaga 3960 acgggcaccc tgaggatttt tacatgcgcg ctatgaagcc ctctacctct ggtggttggg 4020 catggcctgg atccaagaag aagtactctg aacagtgctc tctggatttc aagtcagacg 4080 cttacatgcc cctttacgac gtgaaggagc aggtcgtgga gcaactcctc gcttacgagc 4140 gaggagaaga cgctctcccc ctgcttggag ctcaactcaa agatgagccc cgcgcataca 4200 agaagatagt ggatcgtaag acccgcgtct tctgtatgtc tccgtacgag tccaccctcg 4260 tcaaccgcat gtacctcatg cctttttaca cccttatggt ggaacacgga gatatctttc 4320 gcactgcgat tggcattaac atgcactcgc aggatgttgg agacctggtg acccgcatga 4380 ctgacttttc tgatcagttt atggagggtg actacggtgg ctacgacacc agtatgccat 4440 acgacatcgg ccttgcagcc aacactgtgg tttaccaggt ctgtcaagac cttggttacg 4500 actcccacgc cttgcagatg gtgcgaggaa tccttagcga taacctctac cccactgtag 4560 tcatgcgtgg tgatgtcttt gccgccccgg ctcttcagcc gagcggtaaa tacgccactg 4620 ctgaggacaa ctcccttcgg gggttgattc tcatggtcta cgcctggatc agtgaatgca 4680 ctgacattgg agaccaatgc acggggcgtg cgaggactac tcagtttcaa cctgaggact 4740 tcttcacgca agtgctgccc gttatttacg gggacgacat gctggcaggg gtgaaacccg 4800 tcgctcagca attttacaac aacaacactt accagacttt ctgcaaggaa gtctatggtt 4860 tggagttcac caacgctcag aagacggccg agatggccaa ctttcttgag tgggatgata 4920 cttcattcct gaagaggtct ttcgtctttc gcgaagacct ccaggtttgg gttgctcagt 4980 tggaattggc ttccatcatg aagtcaatat gttactactt accgagtaaa tcggtgaatg 5040 aggatgacca gcttatcgat agctgtgtct ccgcaatgcg cgagctcttc ttccacctcc 5100 ccaaggagga atttgaagtt cgcagaaccc gctttgcgga agtctgtgcc gaccttttca 5160 ataaggacgc tacagatgta cttaaggtgt tcccgtcttt tgactgcatt aggcagtcgc 5220 tttacggagt accgacctga cttaacagtc aatcctatgt accctattta tttatatacc 5280 agcatcgcca cgaagcacct gaatatacct cttgtaaata cgagggctgc taatgcagtt 5340 cggagatcag gcccgtaagt tagtgggtga aatacgaagt gaacctttgc tgaaggctag 5400 cccaatgcgg gcagtatact atatggatta tgtttatttt attacttttt atcatggtgg 5460 tcagcccacc gaaattttca ctgaggctaa ggagaaagac aagtctgccg acaagtctaa 5520 ccgaaagccc agtgctcggg agcgtgccgc cgcatttcgc aaggcaatgg aacaagctga 5580 agctgatatc aaagctaaag ttgaagctcc cttcactacc aaatctggtg ttccttttat 5640 cgacgctatg agtctgaccg agcttcaagc tcggccagat cttgggcagg acagcgctac 5700 gcgcaaagcc taccaagtgc ggatgcatgg tctcgctgca cagcatgcag cggaacttac 5760 agccgttctc aagaatcgtc gtgaagtctt ccgagctgcc aaagctcaac gacgccttga 5820 aaggcgtggg aagattctca ctgaatctaa ggaagttggt gagatgtcta tgggtggcat 5880 cgaccacacc gagactcacc agaacgtcca agaccatacc ggcgaagcct ctgacagggt 5940 taccgttggt tcttctattc aggagactgg agatggtagt ggaacacagt attcgttgaa 6000 ctcttttttc gagcgtcctg tcgccattta cgatgcgacg tgggactctg gcactgagta 6060 caacgtcaat tttgagccat gggacttatg gagcaaggat acgtccgttc gagctaagct 6120 cgcgaactac tcctatttca aaggtactat gcacattaag attgcgacta caggtactcc 6180 gtatcactac ggaaccatca tggcttctta ccagccttat ggagtctaca atcagaacct 6240 catcaagtac gatgagatga tgaacgccac cacaccgggg ccggggccaa cgctccccgc 6300 ctacaagtgc tatttaagcc aagcacctgg tgttgcgtac atcgacgtga aggagaacca 6360 gcctgtcgag ctagagattc ccttcattag tcacaaaccc aagttccgcc tttttaacaa 6420 ctcaccggac gtaattacca atgcgaccag ttttgttgat tttaaggaag ctggcgagct 6480 tcggctcgtc acgttgaaca agttggctgt cgccaacgac gattttgata gtgatgtttc 6540 actgaacata tacgcgtggg taaccgacgt tgagttgggc aacattaccg cgacggacat 6600 ggacatcacc gcccaatcta aggatttgac catcttcact gaaggtcgtc cgaagaagaa 6660 gggtttcaac cgtgacaagg cagagggtga cgctaaggcc attcgaaaga aggccgagca 6720 attggaggac gaactttcgt ctgacgatga cgatgattcc tataaccaga gatggtcaaa 6780 ggaggaagac acccgtcaca agacatgggc aaagtcgaaa gaagacaagc ccatgtatgg 6840 caaaggtaac tttggtgagc gctttatgac ctcccttgaa aaagggggcg acgagtacgc 6900 aacacctggc cctgtagcca acattgctac ggctgtctcc aacattggga attctcttaa 6960 ggatattcca gttatcggag gcttcgccaa agctacctcc accatcgcca atggtgtagg 7020 cagggtagcg tcttggtttg ggtggtctaa gccactcgtc cttgacgacc cgacctttgt 7080 caagacgatt ccgttcgcca acggagccgt tactatcggc aaagatactc cacacaagat 7140 ttcgattgac ccgaagcaag agcttacggt tgatcctacc cttggtggaa tggatgacga 7200 tcagatggcc ctgctcaaca ttacgagcag ggagtcgtat cttacgacat tcacttggtc 7260 cgacaacgac gtcgctatga cgacaatttt gtggaagacg tttgtaacgc cttacctagg 7320 gcagtatttt tccagtggca ctaccctttt tcagcctact gcactgtctt ttgccgctca 7380 gccatttatg tactggcgcg gcaagatcaa gtttcgcttt gaggtggtgt gttctaagtt 7440 tcacaggggt aaaattcttt ttaagttcga ccccaatgtg gctatgcacg cactcatctc 7500 gtccggatcc actaagctca accagcagaa caccgtgatt cttgacattc aagatgctca 7560 agatataacg attgaagttg actgggctca tgtgcgcaac tgggctagcg ttccttcacc 7620 ttacgccctt ccctacacga acagtgaggc tcccattcgg aatctcagtc ctacagaggc 7680 gaacggcttt ttggaggtga gaccgctcaa tgagctggtc caaccaacag actccgctga 7740 agtggccatc aacgtatttg tctcgagtga tgacatgcag tttaacctca tgaacccgag 7800 atatttgcct ttccagcgga atatcactac tgagtctatg gatgtgtctt ccgacaccat 7860 caatcctaac gattcgaagg tcgatgagaa gatttttcta aaccactttg gtgagaagat 7920 tttctcgttc agacagctgc tcaagcgcta cgtcacgact gatggcgcac agaatgtcag 7980 tggtgatcaa gagggcctgg gactaattac atgtaacgga accctttacc ccaccacttt 8040 gacgcgccac gcgaatgacg acaacgggca ggtgattgga ctgttcgact atctccgtta 8100 tgcctacatg ggcgtgcgcg gaggttacag acaccgtatc ctgatcaaca cagggcacga 8160 tattacacgt agctcgtata cacgagtcac gttggacgag cagtctttga ctgacgcatt 8220 ttttaacacc ggaagcttca agctcacatc tccggagccg tatttcgata tatattacaa 8280 taccatcaac ggcgctttga tgtttcacca ccataccaat ggtgggattg agttcgagct 8340 tccattttac tcggagaact tgtttctcct ttcctttgcc gaggactacg gatataactc 8400 cgcagaaccg ggcatcggct tttccacgtc tctgcaaaat gcatcttaca gcgtggagac 8460 aacatgcacc ctcaagggtg tgcagacgac ggtcatcacg gatgataccg cacctgccga 8520 ggatttcact ttccttcggt ttcaaggtgc tccgttctac acggagtctg cagacattac 8580 ggacgacatg gtcgtccttc ccgaagggga ggtccttagt tggagctata atgcaaagga 8640 ccaacccttc aaccccactt accttgatgc tcagagagtt gttaggtggg tggttggcgc 8700 gaaagcgccc aaagtcattt ccccatatct tgaacaatat gaagtttaaa gacttgcgga 8760 ttaatttcac ttctaactgc tgcattagcg ctccacagca ggacattgaa gaagttgaaa 8820 gtgacaaatc ctcctcaagg gaggtcgcga ggagacgcgt tagcaaaaat gctgatggcg 8880 cccattctat ttctaccgga cttagtccgg taaaagagag accagaacag gtttcaaagg 8940 atgggtgacc catcctggaa ttttcctgtt agtatctctc cagatttaag agtggacgga 9000 cattagtctt cgattcccaa aaaaaaaaaa aaaaa 9035 //