Dbfetch
ID AB189944; SV 1; linear; genomic RNA; STD; VRL; 4270 BP. XX AC AB189944; XX DT 28-SEP-2005 (Rel. 85, Created) DT 08-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Melon necrotic spot virus CP gene for coat protein, complete cds, isolate: DE Yamaguchi. XX KW . XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4270 RA Omura T.; RT ; RL Submitted (06-SEP-2004) to the INSDC. RL Contact:Toshihiro Omura National Agricultural Research Center, Laboratory RL of Virology; Kannondai, Tsukuba, Ibaraki 305-8666, Japan XX RN [2] RX DOI; 10.1111/j.1365-3059.2005.01253.x. RX AGRICOLA; IND43750477. RA Kubo C., Nakazono-Nagaoka E., Hagiwara K., Kajihara H., Takeuchi S., RA Matsuo K., Ichiki T.U., Omura T.; RT "New severe strains of Melon necrotic spot virus: symptomatology and RT sequencing"; RL Plant Pathol. 54(5):615-620(2005). XX DR MD5; 6cb5fc4be8e760c40a4b53032d674d9c. DR EuropePMC; PMC4337425; 24372390. XX FH Key Location/Qualifiers FH FT source 1..4270 FT /organism="Melon necrotic spot virus" FT /isolate="Yamaguchi" FT /mol_type="genomic RNA" FT /db_xref="taxon:11987" FT CDS 2817..3989 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q3LHM0" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3LHM0" FT /protein_id="BAE45293.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSNDLTVNNGDTNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRVTYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYVHYADSSPWAENVLVVPCDNTWRYMNDTNAV FT DRKLVDFGQFLFATYSGTGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVSIVLNATSIGSLTFTGNSKLVGNSLNVT FT SSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4270 BP; 1067 A; 877 C; 1072 G; 1254 T; 0 other; gggattactc tagccgaatc cccgactttc ttggtttctg tgagttagtt cgtatattgg 60 ttgtctgtct taatcaatac aggttagcaa tggatactgg tttgaaattt cttgtttctg 120 gaggtttagc cacctcatct gttatcagga aagtgagtgc tgtgagttca ttggattcgt 180 cccttccttc atcgtctata ctatctgcca ttcatgggtc ttggactagt gctatcagcc 240 acgattgtag caagatcgcc aaggttgcca ccgtaattgg aattggttat cttggggttc 300 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagc gaactctata attacatatg 360 gggaagaagt ggttgagcaa gtaaaggtgg atattgatga agatgctgaa gaggagtccg 420 ataccggtga ggaaattgtg gttggcacga taggtattgg tatacacact aacgtcaacc 480 ctgaagttcg agctaagcgt agacatagat cgaggccatt cattaagaaa attgtgaatt 540 tgacgaaaaa tcactttggt ggatgtcccg attcaagtaa atcgaacgtc atggctgtta 600 gcaaatttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag acgagattga 660 tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat gtacgacatt tccagtaaag 720 ctctgttaaa cagcgagata ttaacagaga acagagccac actggaccgc ctcaaaactc 780 ttgatgggtg gctgtcacat ttagtgtgcc acccccttag cgcgaaggct tggaggcggg 840 cgattgacaa cttgtgtggt cttcctgatt ggaaggcctt caagttggtc aactaggggt 900 gcctagagga actcgctggg ttctgtactt cggtacggag agggacgcac ccagacatga 960 ccgagtttcc tcaggatcgt cccattaaga cacgcaaact gtattgtttg gggggagttg 1020 gaactagcgt gaagttcaat gtgcacaata actctctagc caaccttcgg cgcggtctca 1080 tagaacgcgt tttctttgtt gaaaatgata agaaggaact agagcctgcc cctaaacccc 1140 ttagtggtgt gtttgatcgc ttaatctggt ttcgtcggaa actccataat attgtgggta 1200 ctcattccag tattagtcca ggtcaattct tggattttta tactggcagg aggcgtacaa 1260 tttatgaagg tgccgtgaag tcattggagg ggttaagtgt tcaaagaagg gatgcctatt 1320 tgaaaacgtt tgttaaggcg gagaagatta acaccactag gaagcctgac ccagctccgc 1380 gggtcataca accgaggaac gtaagatata atgttgaggt tggtcgttat ctacgtaggt 1440 ttgagcatta cctctatcga ggaattgatg aaatctggaa tggccccacg ataattaaag 1500 gatacactgt cgagcaaatt gggaaaatcg ctcgcgatgc ttgggactct ttcgtgagcc 1560 ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca tgtatcctcc gacgctctta 1620 aatgggaaca tagtgtttat cttgatgctt tttgccatga ttcttatctt gcagaattgt 1680 tggagtggca attagtcaat aagggagtcg ggtatgccag tgatggaatg atcaaatata 1740 aggttgatgg gtgccggatg agtggtgata tgaatacagc tatgggtaac tgtctgattg 1800 cctgtgccat cacacatgat ttcttccgta gtcgtggcat cagggcgcgt ttgatgaaca 1860 atggtgatga ctgtgtcgta atgtgcgaaa aagaatgtgc cgcggtggtt aaagccgaca 1920 tggtaaggca ctggagacaa ttcgggtttc aatgtgagct cgaatgcgac gcagaagtct 1980 tcgagcaaat tgagttttgt caaatgcggc ctgtgtacga cggggaaaaa tatgtgatgg 2040 tgcggaatcc gttagttagt ctgtctaaag attcatactc agtcggccca tggaatggaa 2100 tcaaccatgc acgcaagtgg gttaatgctg ttggcttgtg tggcttatcc ctcactggtg 2160 gaattcctgt tgtccaaagt tactataata tgatgattcg taacactcag tccgtgaaca 2220 gttctggcat tctccgggat gtcagttttg ctagtggatt tcgggagtta gcgcgattgg 2280 gtaacaggaa aagtggtgct atatcagaag acgcccgttt tagcttttat ctcgcatttg 2340 gcattactcc agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt 2400 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggacc ctcaacgaac 2460 tgtagaacaa actaatcctc ggggaagaag taaagaacgt ggtgacagcg ggggaaaaca 2520 gaagaactca atggggcgaa agatagccaa tgatgctatc tctgaatcga agcagggagt 2580 tatgggtgct agcacataca tcgctgataa aattaaggta actatcaact ttaattttta 2640 gtgtatggct tgttaccgtt gtgactccag ccccggggat tactctggag ctctgcttat 2700 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag gaaatactta 2760 cgtacaccac ttcgataatt cttccgttaa gacgcaatac gttggcatct ctacaaatgg 2820 cgatggttaa acgcattaat aatttaccaa cagtgaagct tgctaagcag gctctgcccc 2880 tgctaacgaa tcctaaaatt gtgaataagg ccatagatgt ggttcctttg gtcgtccagg 2940 gtggtcagaa attgtccaaa gctgccaagc ggttgcttgg cgcttatggt ggtaacattt 3000 cttacactga gggcgccaag cctggtgcta tatccgctcc agttgccatt agtaggcgag 3060 tggcggggat gaagcctagg tttgttcgat ccgaaggatc tgtgaagata gttcataggg 3120 agtttattgc ctctgttctt ccgtcgaatg atctcaccgt gaacaatggt gataccaata 3180 tcggtaagta cagggtcaat cccagtaata acgctttatt cacatggctt cagggacaag 3240 cgcaattata tgatatgtac agatttactc ggcttcgagt tacctatatt ccaactaccg 3300 gatccacttc cacaggtcgt gtttctatcc tttgggatag agactctcag gatccccttc 3360 ctattgaccg cgccgctatt agttcttatg ttcattacgc agattcatcg ccttgggcag 3420 agaacgtttt agtggttcca tgtgacaata cgtggaggta tatgaatgat actaatgcag 3480 tggaccggaa gttggttgat tttgggcagt ttctctttgc cacttattct ggtactggtg 3540 ccaccgccca tggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccga 3600 tcgctggaat ggtgtgtatg tttgatcgct tggtctcttt ctctgaagtc ggatctacaa 3660 ttaaaggagt caattatatt gctgatcgtg atgtaataac tacggggggt aatattggtg 3720 tcaacatcaa tattcccggg acttatctcg tctcgattgt tcttaatgcc acatcaattg 3780 gctccctcac cttcactggt aattctaaac ttgtaggcaa tagtcttaac gttaccagca 3840 gtggtgcttc tgctcttaca tttaccctta actccactgg tgtgcccaac agttccaatt 3900 cttcattctc tgtgggcact gttgttgcat tgactagggt ccgtatgacg atcactcgct 3960 gctctcctga aactgcctac ctcgcctaga ttaaatttac tatactccaa atctggtctc 4020 tcttatacct acctgttctc agccagatct ctgttctggt gtcctatagg tgtccttgtc 4080 gtgtgtagtg cggtctggct aaccgtaacg gcgtatcggc ttggttctcc gacgattagg 4140 ctccgggatg tacgacatag ttgaagatgg atggtgtttg gtagatcacc gctagcaaaa 4200 tacactctgt gtggggcgtg ctagtggata gtcatgtatg tttgagatgg gttataggcc 4260 catcccgccc 4270 //