ID   AB188967; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188967;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; ee76cd821fae1af5949ba9704d119a25.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689M9"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689M9"
FT                   /protein_id="BAD38786.1"
FT                   /translation="SDGISRSFMSDYGALEAVHHQSTNEMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQRLQSGITEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHYFGEAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDENPF
FT                   TDITLVQKHFGDIRNDLLAQDELEPESLRFHKTIQAYYTNNKTGKALKVDLTPHMPLKV
FT                   CDIHATIAGFPEREFELRQTGKAQPISIDEVPKANTEVVSVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNNSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQMKSITSVVSETSTVMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TFETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 508 A; 315 C; 345 G; 359 T; 0 other;
     tctgacggaa tttcccgaag tttcatgagt gattatggag cactcgaagc agtgcatcat        60
     caaagcacta atgaaatgag taagttcctt aaactgaagg gtaaatggaa caaaacatta       120
     atcacaagag atgtattggt catatgcggt gttcttggag gtggaatttg gatgattata       180
     cagcgcctac aatctggaat cacagaacct gtaactcatg aagcaaaagg caagaggcaa       240
     agacaaaagc tgaagttccg taatgctcga gataacaaga tgggtagaga agtctacggg       300
     gatgacgaca ccatagaaca ttacttcgga gaggcctaca caaagaaagg aaagagcaag       360
     ggtagaacgc gcggcctcgg ccataaaaac agaaagttca tcaacatgta tggatttgac       420
     cctgaagatt tctccgcagt tagattcgtg gacccactca caggagctac attggatgag       480
     aacccattca cagatatcac ccttgtgcaa aaacactttg gggatatacg aaatgactta       540
     ctcgcgcaag acgaactaga gccagagtca ctacgatttc ataaaacgat ccaggcctat       600
     tacacaaaca acaagacggg taaagctttg aaagtggatt tgactccaca catgcctctc       660
     aaggtgtgcg atattcatgc aactattgct ggttttccgg agcgggaatt tgaactgaga       720
     caaactggaa aagctcaacc tataagcata gatgaagtgc caaaggctaa cactgaggta       780
     gtctcagttg atcacgaaag cagttcaatg tttagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacgaacaat tcagatggtg cgtcaaactc attgtatgga       900
     gttggttttg ggccactcat attaacaaat cgacaccttt ttgaacgaaa caacggagag       960
     ctattgataa aatcgcgaca tggcgagttt gtgatcagaa acacaacgca acttcatctt      1020
     ctgccaattc cggacagaga cctattgcta attcgcttgc cgaaggacat cccacctttt      1080
     ccccaaaaat tggggttcag acaacctgag aaaggggaga ggatttgtat ggtaggatct      1140
     aatttccaga tgaagagcat tactagtgta gtctcagaga ctagcacagt tatgccagtg      1200
     gagaacagcc aattttggaa acactggatc agtactaaag atggtcaatg cggtagccca      1260
     atggtgagta cgaaggacgg aaagatactt ggattgcata gtctagccaa tttccaaaac      1320
     tccattaact acttcgctgc ctttccagat gactttgccg agaaatatct ccacacattt      1380
     gagacacatg aatgggtcaa acactggaag tacaatacta gcgggatcag ttggggctct      1440
     ctaaatattc aagcagcaca gccagcaggt ttattcaaag tgagcaaact aatatcagat      1500
     ctcgatagta cagcagttta cgcacaa                                          1527
//