ID   AB188962; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188962;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; 49035dca6a4ea01df6f7105d0bf2f040.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="POL2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689N4"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689N4"
FT                   /protein_id="BAD38781.1"
FT                   /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLQLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMVVQHFRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 497 A; 337 C; 360 G; 333 T; 0 other;
     actgacggaa tatctcggag ctttatgaga gattacggag cactcgaggc agttcaccat        60
     caaagcacta atgaaatgag caagtttcta cagctcaagg gcaagtggaa caaaacgcta       120
     attacgcgag atgtactggt catttgcgga gtacttggag gaggaatatg gatggttgtc       180
     caacacttcc gctcaaaaat ttctgagccc gtaactcacg aggcgaaagg caagaggcaa       240
     agacagaaac tgaagtttcg caatgcccga gacaacaaaa tgggtaggga agtgtatgga       300
     gacgacgaca ccatagagca tttctttgga gatgcctaca caaagaaagg aaagagcaaa       360
     ggcaggacgc gtggcatcgg gcacaaaaac aggaagttca ttaacatgta tggctttgat       420
     cccgaagatt tctctgcagt taggttcgta gatccactca caggagcgac actagacgat       480
     aacccattca cagacatcac ccttgtgcaa aagcactttg gtgacataag aatggattta       540
     ctcggagagg atgaactgga cccaaatgag atacgagtga acaagacaat ccaggcatac       600
     tacatgaaca ataaaacagg caaagctttg aaggtcgatc tgacaccaca catacctctc       660
     aaggtgtgtg accttcatgc aaccattgcc ggattcccag agagagaaaa cgaattgagg       720
     cagactggaa aggctcagcc tatcagtata gatgaagtgc cgagagccaa caacgaactc       780
     atcccagtgg accatgagag caactctatg ttcagagggt tgcgtgacta caacccaatc       840
     tcgaacaaca tttgtcacct tacaaatgtg tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg ggccactcat attaacgaac cgacatctct ttgagcggaa caacggcgag       960
     cttgtaataa agtcacgaca tggtgaattt gtgattaaaa atacaactca gctacatcta      1020
     cttccaatac cggacagaga tcttttgcta atccgattgc caaaggacgt cccgcctttt      1080
     ccgcagaaac taggctttag acaacctgaa aagggtgagc gaatttgcat ggtaggatcc      1140
     aatttccaga ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg      1200
     gagaatagtc agttctggaa acactggatt agcactaaag acggccaatg cggaagtcca      1260
     atggtgagca caaaggacgg aaaaatactt ggattacaca gcctggcgaa tttccagaac      1320
     tccatcaatt attttgctgc tttcccagat gatttcgccg agaagtatct tcatactatt      1380
     gaagcacacg agtgggtcaa acattggaag tataacacca gcgccatcag ttggggctct      1440
     ctgaatatac aagcgtcgca gccgtcaggc ttgttcaaag taagcaagct aatttcagac      1500
     cttgacagca cggcagtcta cgcacaa                                          1527
//