ID   AB188959; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188959;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NLD1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; f2d80bf72ceaf3d957ee25a2fcebec65.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NLD1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689N7"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689N7"
FT                   /protein_id="BAD38778.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTNDMSRFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDTKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLEEDELDPNEIRVDKTIQAYYMNNKTGKALKVDLTPHMPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGIGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSHFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 487 A; 336 C; 363 G; 341 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gaatatggag ctctcgaggc agttcaccat        60
     caaaacacca acgatatgag cagattcctc aagcttaagg gcaagtggaa caaaacgcta       120
     attacacgag atgtgttggt gctttgtgga gttctcggag gtggactgtg gatggtcatt       180
     cagcacttgc gatcaaaaat ttctgagccc gtaacccatg aagctaaagg caagaggcag       240
     agacagaaac tgaagtttcg caatgcccga gataccaaga tgggcaggga ggtgtatgga       300
     gatgatgaca ccatagaaca cttctttggg gatgcttaca caaagaaggg aaagagcaaa       360
     ggcagaacac gtggtatcgg ccacaaaaac aggaaattca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgta gatccactca caggagcgac gctggacgac       480
     aacccgctca cagacattac ccttgtgcaa gagcacttcg gtaacataag aatggactta       540
     ctcgaagagg atgagcttga cccaaatgaa atacgtgtgg ataagacaat ccaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catgcccctc       660
     aaggtgtgtg accttcacgc caccattgct ggattcccgg agcgagagaa tgaattgagg       720
     cagactggaa aggctcagcc catcaacata gacgaagtac caagagccaa caacgaactc       780
     gtcccagtgg accacgaaag caactccatg ttcagagggt tacgtgacta caacccaatt       840
     tcaaacaaca tttgtcattt aacgaatgta tcagatggag catcaaattc gttgtacgga       900
     attgggtttg gaccactcat actaacaaat cgacaccttt ttgaacggaa caatggtgag       960
     cttgtaataa aatctcgaca tggtgagttc gtgatcaaga acacaaccca gctacattta      1020
     ttgccgattc cggacagaga tctcctgttg atcaggctac cgaaagatgt accacccttt      1080
     ccgcaaaaat taggcttcag acaacctgag aagggtgaga ggatttgcat ggtaggatcc      1140
     aatttccaaa ctaaaagcat tacaagcata gtctctgaga ctagcacaat aatgccagta      1200
     gagaatagtc atttttggaa acactggatc agcacgaagg acggtcaatg tggaagtcca      1260
     atggtgagca caaaggatgg gaaaatactc gggctacaca gtctagcgaa ttttcagaac      1320
     tccatcaatt acttcgctgc ttttccggat gattttgccg agaagtatct ccacactatt      1380
     gaagcgcacg agtgggtcaa gcactggaag tacaacacta gcgcaatcag ttggggctct      1440
     ttgaatatac aagcatcaca accagcaggc ttgttcaagg tgagcaagtt gatttcagac      1500
     cttgatagca cggcagttta cgcacaa                                          1527
//