ID   AB188955; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188955;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
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DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; 1d6fb6e1ad1fa287e3dd7ebdfdf8328b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA5"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689P1"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689P1"
FT                   /protein_id="BAD38774.1"
FT                   /translation="TDGISRSFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMILQRLQSGITEPVIHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHYFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDESPF
FT                   TDITLVQKHFGDIRTDLLEEDEIEPQALQFHKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREFELRQTGKAQPISISEVPKANAELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVISETSTVMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 498 A; 331 C; 353 G; 345 T; 0 other;
     actgatggaa tttcccggag ttttatgagt gagtatggag cacttgaggc agtccatcat        60
     cagagcacca atgacatgag taagttcctc aagcttaagg gcaagtggaa taagacgcta       120
     atcacaaggg acgtgttggt tatttgtgga gtccttggag gcgggatttg gatgatccta       180
     cagcgtttgc aatctgggat tactgaaccc gtgatacatg aagcaaaagg caagaggcag       240
     agacagaagc taaaattccg caatgctcgg gacaacaaaa tgggcagaga ggtttatggg       300
     gatgacgaca ctatagagca ctactttgga gatgcttaca caaagaaagg gaagagcaaa       360
     ggtagaactc gtggtctcgg tcacaagaac agaaaattca tcaatatgta tggatttgac       420
     cctgaagatt tctctgcagt caggttcgtg gatccactca caggagcaac gctggatgag       480
     agccctttta cggacatcac cctcgttcag aaacactttg gagatatacg aaccgactta       540
     ctcgaggaag atgagataga accacaggcg ctacaattcc ataaaacgat ccaggcatac       600
     tacatgaaca ataaaacagg taaagccttg aaggttgact taacaccaca catacctctc       660
     aaggtgtgcg accttcacgc aaccattgct ggatttccag aaagagagtt cgagctgaga       720
     caaactggaa aagcccaacc cataagcata agtgaagtgc ctaaagctaa tgccgagttg       780
     gttcccgtcg accatgagag tagctccatg ttcagaggat tgcgcgacta taacccaata       840
     tcaaacaaca tttgtcatct tacaaatgtt tcagatggag cgtcaaactc actgtacgga       900
     gttggtttcg ggccactcat attaacgaat cggcaccttt ttgaacggaa caacggagag       960
     ctcttgataa agtcgcgaca tggtgaattt gtgatcagaa acacaacgca actccattta      1020
     ctgccaattc cagacagaga cctattgcta attcgactac caaaagatat cccacccttc      1080
     cctcaaaagc taggattcag acaacctgaa aagggagaaa gaatttgcat ggtaggatcc      1140
     aactttcaaa caaaaagtat caccagtgtg atctcagaaa caagtacagt gatgccagtg      1200
     gagaacagtc aattctggaa gcattggatt agcaccaaag acggtcaatg tggtagcccg      1260
     atggtgagta cgaaagatgg taagatactc ggattgcaca gtttagcaaa ctttcaaaac      1320
     tccatcaatt actttgccgc cttcccggat gacttcgccg aaaaatacct tcacacgatt      1380
     gagacacatg aatgggtcaa gcattggaaa tacaacacta gtggaattag ttggggctct      1440
     ttaaatatcc aagcagcgca accagcaggt cttttcaaag tgagcaagct gatatcagac      1500
     ctcgatagca cggcagttta cgcacaa                                          1527
//