ID   AB188953; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188953;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
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DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; bf5af2399425b9837bbb24591b25ab4a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA3"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689P3"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689P3"
FT                   /protein_id="BAD38772.1"
FT                   /translation="TDGISRSFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMILQRLQSGITEPVIHEAKGKRQRQKLKFRNARDTKMGREVYGDDNT
FT                   IEHYFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDESPF
FT                   TDITLVQKHFGDIRTDLLEEDEIEPQALQSHKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREFELRQTGKAQPISMSEVPKANAELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVISETSTVMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 497 A; 331 C; 354 G; 345 T; 0 other;
     actgatggaa tttcccggag ttttatgagc gaatatggag cacttgaggc agttcatcat        60
     cagagcacca acgacatgag taaattcctc aagcttaagg gcaagtggaa caagacgcta       120
     attacaaggg acgtgttggt tatttgcgga gtccttggag gcgggatatg gatgatccta       180
     cagcgtttac aatctggaat tactgaaccc gtaatacatg aagcaaaagg caagaggcag       240
     agacagaagc taaaattccg caatgctcgg gacaccaaaa tgggcaggga ggtctatggg       300
     gatgacaaca ctatagagca ctactttgga gatgcttaca caaagaaagg gaagagcaaa       360
     ggtagaactc gtggtctcgg tcacaagaac agaaaattca tcaatatgta tggatttgac       420
     cctgaagatt tctctgcagt cagattcgtg gatccactca caggagcaac gctggatgag       480
     agccctttta cggacatcac cctcgttcag aaacactttg gagatatacg aaccgactta       540
     ctcgaggaag atgaaataga accacaggcg ctacagtccc ataagacgat ccaggcatac       600
     tacatgaaca ataaaacagg taaagccttg aaggttgact taacaccaca catacctctc       660
     aaggtgtgcg accttcacgc aaccattgct gggttcccag aaagagagtt tgaactgaga       720
     caaactggaa aagcccaacc cataagcatg agtgaagtgc ctaaagctaa tgccgagtta       780
     gttcccgtcg accatgagag tagctccatg ttcagagggt tgcgcgacta taatccaata       840
     tcaaacaaca tttgtcatct tacaaatgtt tcagatgggg cgtcaaactc attgtatgga       900
     gttggtttcg ggccactcat attaacgaat cggcatcttt ttgaacggaa caacggagag       960
     ctcttgataa agtcgcgaca tggtgaattt gtgatcagaa acacaacgca actccatttg      1020
     ctgccaattc cagacagaga cctattgcta attcgtctac caaaggatat cccacccttc      1080
     cctcaaaagc taggattcag acaacccgaa aagggagaga gaatttgcat ggtagggtcc      1140
     aacttccaaa caaaaagcat caccagcgtg atctcagaaa caagtacagt gatgccagtg      1200
     gaaaacagtc aattttggaa gcattggatt agcaccaaag acggtcaatg tggcagtccg      1260
     atggtgagca cgaaagatgg taagatactc ggattgcata gcttagcaaa tttccaaaac      1320
     tccattaact actttgccgc cttcccggat gatttcgctg aaaaatacct ccatacgatt      1380
     gaagcacatg agtgggtcaa gcattggaaa tacaacacca gtggaattag ttggggctct      1440
     ttaaatattc aagcagcgca accagcaggt ttattcaaag taagcaagct gatatcagac      1500
     cttgatagca cggcagttta tgcgcaa                                          1527
//