Dbfetch
ID AB188950; SV 1; linear; genomic RNA; STD; VRL; 1527 BP. XX AC AB188950; XX DT 27-AUG-2004 (Rel. 81, Created) DT 03-DEC-2004 (Rel. 82, Last updated, Version 2) XX DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC43. XX KW . XX OS Turnip mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-1527 RA Ohshima K.; RT ; RL Submitted (24-AUG-2004) to the INSDC. RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730) XX RN [2] RX DOI; 10.1016/j.virol.2004.09.040. RX PUBMED; 15567435. RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J., RA Ohshima K.; RT "Comparisons of the genetic structure of populations of Turnip mosaic virus RT in West and East Eurasia"; RL Virology 330(2):408-423(2004). XX DR MD5; beb8391842d9b1ae6b14202e9444c6ee. XX FH Key Location/Qualifiers FH FT source 1..1527 FT /organism="Turnip mosaic virus" FT /isolate="GRC43" FT /mol_type="genomic RNA" FT /db_xref="taxon:12230" FT CDS <1..>1527 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q689P6" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q689P6" FT /protein_id="BAD38769.1" FT /translation="SDGISRSFMSEYGALEAVHHQSTNEMSKFLKLKGKWNRTLITRDV FT LVICGVLGGGIWMIIQRLQSGITEPVTHEAKGKRQRQKLKFRNARDTKMGREVYGDDDT FT IEHYFGEAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDENPF FT TDITLVQKHFGDIRTDLLAQDELEPESLRFHKTIQAYYTNNKTGKALKVDLTPHIPLKV FT CDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTEVISVDHESSSMFRGLRDYNPIS FT NNICHLTNNSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQMKSITSVVSETSTVMP FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDNFAEKYLH FT TFETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ" FT mat_peptide <1..63 FT /gene="CI" FT /product="CI protein" FT mat_peptide 64..222 FT /gene="6K2" FT /product="6K2 protein" FT mat_peptide 223..798 FT /gene="NIa-VPg" FT /product="NIa-VPg protein" FT mat_peptide 799..>1527 FT /gene="NIa-Pro" FT /product="NIa-Pro protein" XX SQ Sequence 1527 BP; 498 A; 308 C; 350 G; 371 T; 0 other; tctgacggaa tttcccgaag ttttatgagt gagtatggag cgcttgaagc agtacatcat 60 caaagtacta atgaaatgag taagttcctt aaactgaaag gtaaatggaa cagaacatta 120 atcacaagag atgtattggt catatgcggt gttcttgggg gtggaatttg gatgattata 180 cagcgcctgc aatctggaat cacagaacct gtaactcatg aagcaaaagg caagaggcaa 240 agacaaaaat taaagtttcg taatgctcga gacaccaaaa tgggtagaga agtctacggg 300 gatgacgaca ccatagaaca ctacttcggc gaagcctaca caaagaaagg aaagagtaag 360 ggtagaacgc gtggcctcgg ccataaaaac agaaagttca tcaacatgta tggatttgac 420 cctgaagatt tctccgcggt tagattcgtg gacccactca caggagctac gttggatgag 480 aacccattca cggatatcac ccttgtgcaa aaacactttg gagatatacg aactgattta 540 cttgcacaag atgaattgga gccagaatcg ctacgatttc ataagacaat ccaggcctac 600 tacacgaaca acaagacggg caaagctttg aaagtggatt taactccaca catccctctc 660 aaggtatgcg accttcatgc aactattgct ggttttccgg agcgggaatt tgaattgagg 720 caaactggga aagctcagcc tataagcata gacgaagtgc caaaggctaa cactgaggta 780 atctcagttg atcacgaaag cagttcaatg tttagagggt tgcgtgatta caacccaata 840 tcaaacaata tttgtcatct cacgaacaat tcagatggtg cgtcaaactc attgtatgga 900 gtcggttttg ggccacttat attaacaaac cgacacctgt ttgaacgaaa caatggagag 960 ttgctgataa aatcgcgaca tggcgagttt gtgatcagga acacaacgca acttcatctt 1020 ttgccaattc cggacagaga tctattgcta attcgtttgc caaaggacat cccacctttt 1080 ccccaaaaat tggggttcag acaacctgag aaaggggaga ggatttgtat ggtgggatct 1140 aattttcaga tgaagagcat tactagtgtg gtctcagaga ccagcacagt tatgccagtg 1200 gagaatagcc agttctggaa acattggatc agtactaaag atggtcaatg cggtagccca 1260 atggtgagca cgaaggacgg aaagatactt ggattgcata gtttagctaa tttccaaaac 1320 tccatcaact attttgccgc ctttcccgat aactttgctg agaaatatct ccacacattt 1380 gagacacatg aatgggtcaa acactggaag tacaatacta gcgggatcag ttggggctct 1440 ctaaatattc aagcagccca gccagcaggt ttattcaaag tgagcaaact aatatcagat 1500 ctcgatagca cagcagttta tgcacaa 1527 //