ID   AB188922; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188922;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; 77e29cfca4d0f81292d529a9b835f2c5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DEU5"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689S4"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689S4"
FT                   /protein_id="BAD38741.1"
FT                   /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLQLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQAAQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 500 A; 347 C; 357 G; 323 T; 0 other;
     actgacggaa tatctcggag ctttatgaga gattacggag cactcgaggc agttcaccat        60
     caaagcacta atgaaatgag caagttccta cagctcaagg gcaagtggaa caaaacgcta       120
     atcacgcgag atgtgctggt catttgcgga gtacttggag gaggaatttg gatgattgtc       180
     caacacttac gctcaaaaat ttctgagccc gtaactcatg aggcgaaagg caagaggcaa       240
     agacagaaac tgaagtttcg caatgcccga gacaacaaaa tgggtaggga agtgtatgga       300
     gacgacgaca ccatagagca tttctttgga gatgcctaca caaagaaagg aaagagcaaa       360
     ggcaggacgc gtggcatcgg gcacaaaaac aggaagttca ttaacatgta tggctttgat       420
     cctgaagatt tctctgcagt taggttcgta gatccactca caggagcgac actagacgat       480
     aacccattca cagacatcac ccttgtgcaa aagcactttg gtgacataag aatggattta       540
     ctcggagagg atgaactgga cccaaatgag atacgagtga acaagacaat ccaggcatac       600
     tacatgaaca ataaaacagg caaagctttg aaggtcgatc tgacaccgca catacctctc       660
     aaggtgtgtg accttcatgc aaccattgcc ggatttccag agcgagaaaa cgaactgagg       720
     cagactggaa aggctcagcc catcaacata gacgaagtgc caagagctaa caatgaactc       780
     gtcccagtag accatgagag caactccatg ttcagaggac tgcgcgacta caacccaatc       840
     tcgaacaaca tttgtcatct tacaaatgtg tcagatgggg catcaaactc gttatatggg       900
     gtcggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa caatggcgag       960
     cttgtgataa agtcacgaca tggcgagttt gtaattaaaa acacaactca gctacatcta      1020
     ctcccaatac cagataggga tcttttgcta atccgattgc caaaggacgt cccacctttt      1080
     ccacagaaac taggcttcag acaacctgaa aagggtgagc gaatttgcat ggtaggatcc      1140
     aatttccaga ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg      1200
     gagaacagtc aattttggaa acactggatt agcactaaag acggccaatg cggaagtcca      1260
     atggtgagca caaaggacgg gaaaatactc ggattacaca gcctggcgaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gactttgccg agaagtatct tcacaccatt      1380
     gaagcacacg agtgggtcaa gcattggaag tataacacta gcgccatcag ttggggctct      1440
     ctgaatatac aagcagcgca accatcaggc ttgttcaaag taagcaagtt aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//