ID   AB188920; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB188920;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.09.040.
RX   PUBMED; 15567435.
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330(2):408-423(2004).
XX
DR   MD5; c8f2bbb7e9df4d409746d8d52e407bb9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DEU1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q689S6"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q689S6"
FT                   /protein_id="BAD38739.1"
FT                   /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMVVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKGKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 498 A; 343 C; 361 G; 325 T; 0 other;
     actgacggaa tatctcggag cttcatgaga gactacggag cactcgaagc agtccaccat        60
     cagagcacta atgaaatgag caagttccta aaacttaagg gcaagtggaa caaaacgcta       120
     atcacgcgag atgtgctggt catttgcgga gtacttggag gaggaatatg gatggttgtc       180
     caacacttac gctcaaaaat ttctgagccc gtaactcatg aggcaaaagg caaaaggcaa       240
     agacagaaac taaagtttcg caacgcccga gacaacaaaa tgggtaggga agtgtatgga       300
     gatgacgaca ccatagagca tttctttgga gatgcttaca caaagaaagg aaagggcaaa       360
     ggtaggacac gtggcatcgg gcacaaaaac aggaagttca ttaacatgta cgggtttgat       420
     cctgaagatt tctccgcagt caggttcgtt gatccactca caggggcgac actagatgat       480
     aacccattca cggacatcac ccttgtgcaa aagcactttg gtgacataag aatggattta       540
     ctcggagagg atgagctgga cccaaatgag atacgagtga acaagacaat ccaggcctat       600
     tacatgaaca ataaaacagg caaagctctg aaggtagacc tgacaccaca catacctctc       660
     aaggtgtgtg accttcacgc aactattgct ggattcccag agagagagaa tgaactgagg       720
     caaactggga aggctcagcc tatcagtata gacgaagtgc cgagagctaa caacgaactc       780
     atcccagtgg accatgagag caactccatg ttcagagggt tgcgtgacta caacccaatc       840
     tcgaacaaca tctgccatct tacaaatgtg tcagatggag catcaaactc gttatatggg       900
     gttggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa caatggcgag       960
     cttgtaataa agtcacgaca cggtgagttt gtgattaaaa acacaactca gctacatcta      1020
     ctcccaatac cggatagaga ccttttgcta atccgattgc caaaggacgt cccacccttt      1080
     ccgcagaaac taggcttcag acaacctgaa aagggtgagc gaatttgcat ggtaggatcc      1140
     aatttccaga ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg      1200
     gagaacagtc agttttggaa acactggatt agcactaaag acggtcaatg cggaagtcca      1260
     atggtgagca caaaggacgg gaaaatactc ggactacaca gcctggcgaa tttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgctg agaagtatct tcacaccatt      1380
     gaagcacacg agtgggtcaa gcactggaag tataacacta gcgccatcag ttggggctct      1440
     ctgaatatac aagcatcgca accatcaggc ttgttcaaag taagcaagtt aatctcagac      1500
     ctcgacagca cggcagttta cgcacaa                                          1527
//