ID   AB188236; SV 1; linear; genomic RNA; STD; VRL; 2208 BP.
XX
AC   AB188236;
XX
DT   18-AUG-2011 (Rel. 109, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cucumber mosaic virus RNA3 segment, complete sequence, isolate:CM95.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2208
RA   Natsuaki T.;
RT   ;
RL   Submitted (17-AUG-2004) to the INSDC.
RL   Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture;
RL   Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan
XX
RN   [2]
RA   Suzuki M., Yokotsuka H., Matsumoto T., Kosaka Y., Okuda S., Natsuaki T.;
RT   "Complete genome comparison of Cucumber mosaic virus parental and
RT   attenuated isolates";
RL   Unpublished.
XX
DR   MD5; aa14471866f87a9be065ee9ada642f38.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2208
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /isolate="CM95"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Kyoto"
FT                   /isolation_source="a tobacco plant inoculated with two CMV
FT                   isolates, Fuka4-4 and 36a1"
FT                   /note="a mutant selected from Fuka4-4 and 36a1-inoculated
FT                   tobacco plant treated with low temperature"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..117
FT   CDS             118..957
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q787R2"
FT                   /protein_id="BAK61800.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1255..1911
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F8WK18"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:F8WK18"
FT                   /protein_id="BAK61801.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSSDANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSEPCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT   3'UTR           1912..2208
XX
SQ   Sequence 2208 BP; 521 A; 514 C; 524 G; 649 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt atcgagtcgt gttgtccgca catttgagtc        60
     gtgttgtccg cacatatata ttttatttgt tgtacagtgt gttagatttc ccgaggcatg       120
     gctttccaag gtaccagtag gactttaact caacagtcct cagcggctac gtctgacgat       180
     cttcaaaaga tattatttag ccctgaagcc attaagaaaa tggctactga gtgtgaccta       240
     ggccggcatc attggatgcg cgctgataat gctatttcag tccggcccct cgttcccgaa       300
     gtaacccacg gtcgtattgc ttccttcttt aaatctggat atgatgttgg tgaattatgc       360
     tcaaaaggat acatgagcgt ccctcaagtg ttatgtgctg ttactcgaac agtctccact       420
     gatgctgaag ggtccttgag aatttactta gctgatctag gtgacaagga gttatctccc       480
     atagatgggc aatgcgtttc gttacataac catgatcttc ccgctttggt gtctttccaa       540
     ccgacgtatg attgtcctat ggaaacagtt gggaatcgta agcggtgttt tgctgttgtc       600
     atcgaaagac atggttacat tgggtatacc ggtaccacag ctagcgtgtg tagtaattgg       660
     caagcaaggt tttcgtctaa gaataacaac tacactcata tcgcagctgg gaagactcta       720
     gtactgcctt tcaacagatt agccgagcaa acaaaaccgt cagctgtcgc tcgcctgttg       780
     aagtcgcaat tgaacaacat tgaatcttcg caatatttgt taacgaacgc gaagattaat       840
     cagaatgcgc gcagtgagtc cgaggaatta aatgttgaga gccctcccgc cgcaatcggg       900
     agttcttccg cgtcccgctc cgaagccttc agaccgcagg tggttaacgg tctttagcac       960
     tttggtgcgt attagtatat aagtatttgt gagtctgtac ataatactat atctatagtg      1020
     tcctgtgtga gttgatacag tagacatctg tgacgcgatg ccgtgttgag aagggaacac      1080
     atctggtttt agtaagccta catcatagtt ttgaggttca attcctctta ctccctgttg      1140
     agccccttac tttctcatgg atgcttctcc gcgagattgc gttattgtct actgactata      1200
     tagagagtgt gtgtgctgtg ttttctcttt tgtgtcgtag aattgagtcg agtcatggac      1260
     aaatctgaat caaccagtgc tggtcgtaac cgtcgacgtc gtccgcgtcg tggttcccgc      1320
     tccgcctcct cctcctcgga tgctaacttt agagtcttgt cgcagcagct ttcgcgactt      1380
     aacaagacgt tagcagctgg tcgtccaact attaaccacc caacctttgt agggagcgaa      1440
     ccgtgtaaac ctgggtacac gttcacatct attaccctaa agccaccaaa aatagaccgt      1500
     gggtcttatt atggtaaaag gttgttatta cctgattcag tcacggaata tgataagaag      1560
     cttgtttcgc gcattcaaat tcgagttaat cctttgccga aatttgattc taccgtgtgg      1620
     gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgccat ctctgctatg      1680
     ttcgcggacg gagcctcacc ggtactggtt tatcagtatg ccgcatctgg agtccaagct      1740
     aacaacaaat tgttgtatga tctttcggcg atgcgcgctg atataggcga catgagaaag      1800
     tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagct agtacttcat      1860
     gttgacgtcg agcaccaacg cattcccaca tctggagtgc tcccagtctg attccgtgtt      1920
     cccagaatcc tccctccgat ttctgtggcg ggagctgagt tggcagtttt gctataaact      1980
     gtctgaagtc actaaacgtt tttacggtga acgggttgtc catccagctt acggctaaaa      2040
     tggtcagtcg tggagaaatc tacgccagca gatttacaaa tctctgaggc gcctttgaaa      2100
     ccatctccta ggtttcttcg gaaggacttc ggtccgtgta ccttacgaca acgtgctagt      2160
     ttcagggtac gggtgcaccc tttcgtgggg gcctctaaaa ggagacca                   2208
//