Dbfetch
ID AB188232; SV 1; linear; genomic RNA; STD; VRL; 3044 BP. XX AC AB188232; XX DT 18-AUG-2011 (Rel. 109, Created) DT 18-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Cucumber mosaic virus RNA2 segment, complete sequence, isolate:Fuka4-4. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3044 RA Natsuaki T.; RT ; RL Submitted (17-AUG-2004) to the INSDC. RL Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture; RL Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan XX RN [2] RA Suzuki M., Yokotsuka H., Matsumoto T., Kosaka Y., Okuda S., Natsuaki T.; RT "Complete genome comparison of Cucumber mosaic virus parental and RT attenuated isolates"; RL Unpublished. XX DR MD5; 9d5233959964fdb40829e06c42c96550. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3044 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /isolate="Fuka4-4" FT /mol_type="genomic RNA" FT /country="Japan:Saitama" FT /isolation_source="cucumber" FT /db_xref="taxon:12305" FT 5'UTR 1..85 FT CDS 86..2659 FT /codon_start=1 FT /transl_table=1 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:F8WK10" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F8WK10" FT /protein_id="BAK61793.1" FT /translation="MAFSAPAFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLQTPDGAPAEAVSDEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEEC FT EADDVQMDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPNLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNVDVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKYCLEID FT LSKFDKSQGEFHLPIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSQLPPVGDPSKFTTLYNMEA FT KVMEPSVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFCSTEFRVERINSNKQRKKHGIERRRDDKRRTPTGSYGGGEEAETKVSQAESTG FT TRSQKSQRESAFKSQTVPLPTVLSSGWSGTDRVMPPCERGGVTRA" FT CDS 2418..2750 FT /codon_start=1 FT /transl_table=1 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:F8WK11" FT /protein_id="BAK61794.1" FT /translation="MELNVGAMTNVELQLARMVEAKKQRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGPELTGLCRHVNVAELPEPEASRLELSAEDHDFDDTDWFAGNE FT WAEGVF" FT 3'UTR 2751..3044 XX SQ Sequence 3044 BP; 776 A; 674 C; 704 G; 890 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc cctagacttt 60 aaaacttctt tctagtatct tttctatggc tttctccgcc cccgcattct cactagccaa 120 tcttttgaat ggtagttacg gtgtcgacac tcccgaggat gtggaacgct tgcgatctga 180 gcaacgcgaa gaggctgccg cggcctgccg taattacagg cccttacccg ctgtggatgt 240 cagcgagagt gtcacagagg acgcgcattc cctccaaact cctgacggag ctcccgctga 300 agcggtgtct gatgagtttg taacttatgg tgctgaagat taccttgaaa aatctgatga 360 tgagctcctt gtcgcttttg agacgatggt caaacccatg cgtatcggac aactatggtg 420 ccctgcgttt aataaatgtt cttttatttc cagcattgct atggccagag ctttgctgtt 480 ggcacctaga acatcccacc gaaccatgaa gtgttttgaa gacctggtcg cggctattta 540 cactaaatct gatttctatt acagtgaaga gtgtgaagcc gacgacgttc agatggatat 600 ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg tcccgaacgt ctggattcga 660 accgccgccc atttgtgaag cgtgcgacat gatcatgtac cagtgcccgt gttttgattt 720 caatgcttta aagaaatcgt gcgctgagag gactttcgct gatgattatg ttattgaagg 780 tttagatggt gttgttgata atgcgactct gttgtcgaat ttgggtccat ttttggtacc 840 cgtgaagtgt caatatgaaa aatgtccaac gccaaccatc gcgattcctc cgaatttaaa 900 tcgtgccact gatcgtgttg atatcaattt agttcaatcc atttgtgact cgactctgcc 960 cacccatagt aactatgacg actcttttca tcaagtgttc gtcgaaagtg cagattactc 1020 catagatctg gatcatgtta gacttcgaca gtctgatctt attgcaaaaa ttccagactc 1080 agggcatatg ataccggttc tgaacaccgg gagcggtcac aagagagtag gtacaacgaa 1140 ggaggttctt acagcaatta agaaacgtaa tgttgacgtt ccagagctag gtgattccgt 1200 taatctgtct agattgagta aagctgtggc tgagagattt ttcatttcat acatcaatgg 1260 taactctcta gcatccagca actttgtcaa tgtcgttagt aatttccacg attacatgga 1320 gaagtggaaa tcctcaggtc tttcttatga tgatcttcca gatcttcatg ctgaaaattt 1380 gcagttttat gatcacatga taaaatctga tgtgaaacct gtggtgagcg acacactcaa 1440 tatcgacaga ccggttccag ctactataac gtatcataag aagagtataa cctcccagtt 1500 ctcaccgtta tttacagcgc tattcgagcg cttccagaga tgccttcgag aacgtattat 1560 tcttcctgtt ggtaagattt catctcttga gatggcagga tttgatgtca aaaacaagta 1620 ctgcctcgag attgatttgt ctaagtttga taagtctcaa ggtgaatttc acttaccaat 1680 tcaggaacat attttgaatg gtctggggtg tccagctccg ataaccaagt ggtggtgcga 1740 tttccaccga ttctcttaca tcagagatcg tagagctggt gttggtatgc ctattagttt 1800 ccagagacga actggtgatg cattcactta ttttggcaat accattgtca ccatggctga 1860 gtttgcctgg tgttatgaca ccgatcaatt cgaaaaactt ttattctcag gcgatgactc 1920 tctaggattt tcacagcttc cccctgttgg tgatccgagt aaattcacga ctctttacaa 1980 catggaagct aaggtgatgg aaccatcagt accatatatt tgttcgaagt tcttactctc 2040 tgacgagttc ggtaacacat tttccgttcc agatccattg cgcgaggttc agcggttagg 2100 aacaaagaaa atcccctatt ccgacaatga tgaattcttg tttgctcact tcatgagctt 2160 tgttgatcga ttgaagtttt tggaccgaat gtctcagtcg tgtatcgatc aactttcgat 2220 tttctttgaa ttgaaataca agaagtctgg ggaagaggcc gctttaatgt taggcgcctt 2280 taagaaatat accgctaatt tccagtccta caaagaactc tattattcag atcgtcgtca 2340 gtgcgaattg atcaattcgt tttgtagtac agagttcagg gttgagcgta taaattccaa 2400 taaacagcga aagaaacatg gaattgaacg taggcgcgat gacaaacgtc gaactccaac 2460 tggctcgtat ggtggaggcg aagaagcaga gacgaaggtc tcacaagcag aatcgacggg 2520 aacgaggtca caaaagtccc agcgagagag cgcgttcaaa tctcagactg ttccgcttcc 2580 taccgttcta tcaagtggat ggtccggaac tgacagggtt atgccgccat gtgaacgtgg 2640 cggagttacc cgagcctgag gcctctcgtt tagagttatc ggcggaagac catgattttg 2700 acgataccga ttggttcgcc ggtaacgaat gggcggaagg tgtattctga acccttcctt 2760 cttctccctc cggttttctg tggcgggagc tgagttggca gtatcgctat aaactgtctg 2820 aagtcactaa acacattgtg gtgaacgggt tgtccatcca gcttacggct aaaatggtca 2880 gtcgtagaga aatctacgcc agcaaactta caagtttctg aggcaccttt gaaaccatct 2940 cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaacgtg ctggttttag 3000 ggtacgggtg cccactttcg tggggggcct ctaaaaggag acca 3044 //