ID AB188231; SV 1; linear; genomic RNA; STD; VRL; 3357 BP. XX AC AB188231; XX DT 18-AUG-2011 (Rel. 109, Created) DT 18-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Cucumber mosaic virus RNA1 segment, complete sequence, isolate:Fuka4-4. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3357 RA Natsuaki T.; RT ; RL Submitted (17-AUG-2004) to the INSDC. RL Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture; RL Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan XX RN [2] RA Suzuki M., Yokotsuka H., Matsumoto T., Kosaka Y., Okuda S., Natsuaki T.; RT "Complete genome comparison of Cucumber mosaic virus parental and RT attenuated isolates"; RL Unpublished. XX DR MD5; 4a525776e4a5708a46ec123eb6da6062. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3357 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /isolate="Fuka4-4" FT /mol_type="genomic RNA" FT /country="Japan:Saitama" FT /isolation_source="cucumber" FT /db_xref="taxon:12305" FT 5'UTR 1..96 FT CDS 97..3078 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:F8WK09" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8WK09" FT /protein_id="BAK61792.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GIIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTCKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREKKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVSEVSDSPEASSQTPDDTADVCGKEREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLYDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" FT 3'UTR 3079..3357 XX SQ Sequence 3357 BP; 850 A; 736 C; 811 G; 960 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aaacttctct ctcttaatct tttctttgta attcctatgg cgacgtcctc gttcaacatc 120 aatgaattgg tagcctccca cggcgataaa ggactactcg cgaccgccct cgttgataag 180 acagctcatg agcagctcga ggagcaatta cagcatcaac gtagaggccg taaggtctac 240 atccgaaatg ttttgggtgt aaaggattcc gaggtcatcc ggaatcggta tggaggaaag 300 tacgacctcc atcttaccca gcaggagttt gctccccacg gcctagctgg tgccctccgc 360 ttgtgtgaaa ctctcgattg tctagactct ttcccttcat caggtctgcg gcaggacctc 420 gtcttagact tcggaggaag ttgggtcaca cattacctcc gcggacataa cgtacactgt 480 tgttcccctt gtctgggtat ccgcgataag atgcgccatg cggaacgttt aatgaacatg 540 cgcaagatca tcttgaacga tccacaacag ttcgatggtc gacagccgga tttctgcact 600 caaccggctg cggattgcaa agtacaagcc cactttgcta tatctattca tggaggttat 660 gatatgggct ttagaggatt atgtgaagcg atgaatgctc acggaaccac tattttgaag 720 ggaacgatga tgttcgatgg tgcgatgatg tttgacgacc aaggtataat acccgaactt 780 aattgtcaat ggaggaagat aaggagtgct ttctccgaaa ctgaagacgt cacaccactg 840 gttggtaagc ttaattccac agttttctcc cgcgtgcgta agttcaagac gatggtagct 900 tttgatttca tcaatgagtc cactatgtct tatgttcatg attgggagaa tataaaatct 960 tttcttacag accagactta ttcataccga gggatgactt acggtattga acgctgcgtt 1020 attcacgctg gtattatgac gtgcaagatt atcggtgtac ctgggatgtg cccacccgaa 1080 ctcattcgac attgtatttg gttcccctct attaaagact atgttggtct aaagattccc 1140 gcgtcgcaag acttggttga gtggaaaaca gtgcggattt taacgtcaac attacgtgag 1200 actgaagaga ttgccatgag gtgttataat gataagaaag cgtggatgga acaattcaag 1260 gttatcctag gtgttctatc tgcgaaatca tctaccattg tcattaatgg tatgtccatg 1320 caatccggcg agcgaataga tattaacgac tatcattata tcggtttcgc cattcttctc 1380 cacacaaaaa tgaagtatga acaacttgga aaaatgtatg atatgtggaa tgcttcgagt 1440 atttcgaagt ggttcgccgc gttgactcgt ccgctgcgtg tgtttttctc cagtgttgtt 1500 cacgcactat tcccgacttt gagaccccgc gagaaaaaag aattcctgat taagctctcc 1560 accttcgtga cttttaatga agagtgctca tttgacggtg gagaggaatg ggacgtgata 1620 tcatctgctg catacgttgc tacgcaggct gttaccgatg ggaagatttt ggctgcgcag 1680 aaagccgaga agcttgctga gaagcttgca caacccgtga gtgaagtatc ggacagtcct 1740 gaggcgtcat ctcaaacgcc tgatgatact gctgatgttt gtggaaagga gcgagaggtt 1800 tcggaactcg actccctgtc agctcagaca cgttccccca tcactagagt tgctgagagg 1860 gctactgcta tgttagagta tgccgcttat gagaaacaat tatacgacac tacagtgtct 1920 aatttaaaac gcatttggaa catggcgggt ggtgatgaca agagaaactc cctcgagggt 1980 aatctgaagt ttgtttttga tacgtatttt accgttgatc ctatggtgaa cattcatttc 2040 tccacgggtc ggtggatgcg tcctgtgccc gagggtattg tttattctgt tggttataat 2100 gaacgcggtt taggtccgaa gtctgatgga gagctttaca ttgtcaatag tgaatgcgtg 2160 atctgtaaca gtgagtcttt atctactgtc acgcgttctc ttcaagctcc aaccgggacc 2220 attagtcaag ttgacggagt tgctggttgt gggaaaacca cggcaattaa atccattttt 2280 gagccgtcca ctgacatgat cgttaccgcg aacaagaagt ccgcccaaga tgtgcgtatg 2340 gcacttttca aatcgtcgga ttccaaagaa gcttgcacct ttgttcgaac agccgattct 2400 gtcctactta atgaatgtcc gactgttagt agggttttgg ttgatgaggt cgttttgcta 2460 cactttggtc aattatgtgc cgtcatgtct aagttgaagg ctgtgcgagc tatatgtttt 2520 ggggattcgg agcagattgc tttttcctcg cgagatgcct catttgacat gcgtttctct 2580 aagatcattc ctgatgaaac tagtgatgct gacaccacat tccgtagccc acaagatgtt 2640 gtaccgcttg tgcgtttaat ggctacgaag gcccttccga aaggaaccca ttcaaaatac 2700 acgaagtggg tttctcaatc taaagtgaaa agatctgtta catctcgtgc catcgctagc 2760 gtgacattgg ttgacttgga ttcttccagg ttttatataa cgatgaccca agctgataag 2820 gcctcactga tttcaagggc gaaagagatg aatctaccaa agactttctg gaatgaaagg 2880 attaaaaccg tgcatgagtc tcaaggtatt tccgaagacc acgttacttt ggtaagatta 2940 aagagtacaa aatgtgacct gtttaaacag ttttcttatt gtcttgtcgc actgactaga 3000 cacaaggtca cgttccgcta cgagtactgt ggtgtattga acggcgattt aatcgccgaa 3060 tgtgttgctc gtgcttagcg gcctccctcc ttcgggcggg acctgagttg gcggtaatct 3120 gcaaaccgtc tgaagtcact aaacacatcg tgtggtgaac gggttgtcca tccagctaac 3180 ggctaaaatg gtcagtcgtg gagaaatcca cgccagtaga cttacaagtc tctgaggcgc 3240 ctttgaaacc atctcctagg tttcttcgga aggacttcgg tccgtgtact tctagcacaa 3300 cgtgctagtt tcagggtacg ggtgcccact ttcgtggggg tctctaaaag gagacca 3357 //