ID   AB188230; SV 1; linear; genomic RNA; STD; VRL; 2189 BP.
XX
AC   AB188230;
XX
DT   18-AUG-2011 (Rel. 109, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cucumber mosaic virus RNA3 segment, complete sequence, isolate:Mi.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2189
RA   Natsuaki T.;
RT   ;
RL   Submitted (17-AUG-2004) to the INSDC.
RL   Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture;
RL   Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan
XX
RN   [2]
RA   Suzuki M., Yokotsuka H., Matsumoto T., Kosaka Y., Okuda S., Natsuaki T.;
RT   "Complete genome comparison of Cucumber mosaic virus parental and
RT   attenuated isolates";
RL   Unpublished.
XX
DR   MD5; 5eead5140ead3546de72cac96889b41a.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2189
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /isolate="Mi"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Kyoto"
FT                   /isolation_source="Mioga (Zingiber mioga)"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..97
FT   CDS             98..937
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:F8WK07"
FT                   /protein_id="BAK61790.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTYGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1235..1891
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9DWW2"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9DWW2"
FT                   /protein_id="BAK61791.1"
FT                   /translation="MDKSESTSAGRSRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT   3'UTR           1892..2189
XX
SQ   Sequence 2189 BP; 511 A; 509 C; 524 G; 645 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttt        60
     attttatctt tgtacagtgt gttagatttc ccgaggcatg gctttccaag gtaccagtag       120
     gactttaact caacagtcct cagcggctac gtctgacgat cttcaaaaga tattatttag       180
     ccctgaagcc attaagaaaa tggctactga gtgtgaccta ggccggcatc actggatgcg       240
     cgctgataat gctatttcag tccggcccct cgttcccgaa gtaacctacg gtcgtattgc       300
     ttccttcttt aaatctggat atgatgtcgg tgaattgtgc tcaaaaggat acatgagcgt       360
     ccctcaagtg ttgtgtgctg ttactcgaac ggtttccact gatgctgaag ggtccttgag       420
     aatttacttg gctgatctag gtgacaagga attatctcct atagatggac aatgcgtttc       480
     gctacataac catgatcttc ccgctttggt gtctttccaa ccgacgtatg actgtcctat       540
     ggaaacagtt gggaatcgca agcggtgttt tgctgtcgtc atcgaaagac atggttatat       600
     tgggtatacc ggcaccacag ctagcgtgtg tagtaattgg caagcaaggt tttcttcgaa       660
     gaataacaac tacactcata tcgcagctgg gaagactcta gtactgcctt tcaacagatt       720
     agctgagcaa acaaaaccgt cagctgtcgc tcgcctgttg aagtcgcaat tgaacaacat       780
     tgaatcttcg caatatttgt taacgaatgc gaagattaat caaaatgcgc gcagtgagtc       840
     cgaggaatta aatgttgaga gccctcccgc cgcaatcggg agttcttccg cgtcccgctc       900
     cgaagccttc agaccgcagg tggttaacgg tctttagcac tttggtgcgt attagtatat       960
     aagtattgtg agtctgtaca taatactata tctatagtgt cctgtgtgag ttggtacagt      1020
     agacatctgt gacgcgatgc cgtgttgaga agggaacaca tctggtttta gtaagcctac      1080
     atcatagttt tgaggttcaa ttcctcttac tccctgttga gtctcttact ttctcatgga      1140
     tgcttctccg cgagattgcg ttattgtcta ctgactatat agagagtgtg tgtgctgtgt      1200
     ttttctcttt tgtgtcgtag aattgagtcg agtcatggac aaatctgaat caaccagtgc      1260
     tggtcgtagc cgtcgacgtc gtccgcgtcg tggttcccgc tccgcttcct cctccgcgga      1320
     tgctaacttt agagtcttgt cgcagcagct ttcgcgactt aataagacgt tagcagctgg      1380
     tcgtccaact attaaccacc caacctttgt agggagtgag cgttgtaaac ctggatacac      1440
     gttcacatct attaccctaa agccaccaaa aatagaccgc gggtcttatt atggtaaaag      1500
     gttgttatta cctgattcag tcacggaata tgataagaag cttgtttcgc gcattcaaat      1560
     tcgagttaat cctttgccga aatttgattc taccgtgtgg gtgacagtcc gtaaagttcc      1620
     tgcctcctcg gacttatccg ttgccgctat ctcagctatg tttgcggacg gagcctcacc      1680
     ggtactggtt tatcagtatg ctgcatctgg agtccaagct aacaacaaat tgttgtatga      1740
     tctttcggcg atgcgcgctg atataggcga catgagaaag tacgccgtcc tcgtgtactc      1800
     taaagacgat gcactcgaga cggacgagct agtacttcat gttgacgtcg agcaccaacg      1860
     cattcccacg tctggggtgc tcccagtctg attccgtgtt ttccaggacc ctccctccga      1920
     tttctgcggc gggagctgag ttggcagttc tgctataaac tgtctgaagt cactaaacgt      1980
     tttacggtga acgggttgtc catccagctt acggctaaaa tggtcagtcg tggagaaatc      2040
     cacgccagca gatttacaaa tctctgaggt acctttgaaa ccacctccta ggtttcttcg      2100
     gaaggacttc ggtccgtgta cttctagcac aatgtgctag tttagggtac gggtaccccc      2160
     ctttcgtggg ggcctccaaa aggagacca                                        2189
//