ID AB186043; SV 1; linear; genomic RNA; STD; VRL; 3393 BP. XX AC AB186043; XX DT 13-JAN-2005 (Rel. 82, Created) DT 26-JUL-2005 (Rel. 84, Last updated, Version 3) XX DE Cucumber mosaic virus gene for 1a protein, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3393 RA Masuta C., Seshimo Y., Yamaguchi N.; RT ; RL Submitted (30-JUL-2004) to the INSDC. RL Chikara Masuta, Hokkaido University, Graduate School of Agriculture; RL Kita-ku, Kita 9, Nishi 9, Sapporo, Hokkaido, 060-8589, Japan RL (E-mail:masuta@res.agr.hokudai.ac.jp, Tel:81-11-706-2483, RL Fax:81-11-706-2483) XX RN [2] RX DOI; 10.1099/vir.0.81059-0. RX PUBMED; 16033984. RA Yamaguchi N., Seshimo Y., Yoshimoto E., Ahn H.I., Ryu K.H., Choi J.K., RA Masuta C.; RT "Genetic mapping of the compatibility between a lily isolate of Cucumber RT mosaic virus and a satellite RNA"; RL J. Gen. Virol. 86(Pt 8):2359-2369(2005). XX DR MD5; 27ea561cd6b0d33b50d7db8d326d971d. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3393 FT /organism="Cucumber mosaic virus" FT /strain="HL" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q5KSA2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5KSA2" FT /protein_id="BAD86759.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRNFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYIGLKIPASQDLVEWETVRILTSTLRETEEIAMRCYDDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGRMYDMWNASSISMWFTALTR FT PFRVFFSNAVQALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAACVATQ FT AVTDGKILAAQKAEKLAERLAQPVREVSDSPETSSQTSDDTADVCGEEREVSELDSLSA FT QTRSPITRIAERATAMLEYAAYEKQLHDTTVSNLKRIWNSAGGDDKRNSLEGNLNFVFD FT TYFSVDPMVNIRFPTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNGECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACAFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW FT VSQSTVRRSVTSRAIASVTMVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVAMTRHKVTFRYEHCGVLNGDLIAEC FT VARA" XX SQ Sequence 3393 BP; 844 A; 764 C; 823 G; 962 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt tctcaatctt ttctctgaaa ttcctatggc gacgtcctcg ttcaatatca 120 atgaactggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcaacg tagaggccgt aaggtctaca 240 tccggaacgt tctgggtgta aaggattccg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgtt 480 gttccccttg tttgggtatc cgcgataaga tgcgccatgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc 600 aaccggctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcga tgaatgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgatca aggtgtaata cccgaactta 780 attgtcagtg gaggaagatc aggagtgctt tctccgaaac tgaagacgtc acgccactgg 840 ttggtaagct taattccacg gttttctccc gcgtgcggaa cttcaagacg atggtagctt 900 ttgatttcat caacgagtcc actatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttcttacgga ccagacttat tcgtaccgag ggatgacata cggtattgaa cgctgcgtta 1020 ttcacgctgg tattatgacg tacaagatta tcggcgtacc tgggatgtgt ccacccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagacta tattggtcta aagattcccg 1140 cgtcgcagga cttggttgag tgggaaacgg tgcggatttt aacgtcaaca ttacgtgaga 1200 ctgaagagat tgccatgagg tgttatgatg ataagaaagc gtggatggaa caattcaagg 1260 ttatcctagg tgttctatcc gcgaaatcat ctaccattgt tattaatggt atgtccatgc 1320 aatctggcga gcgaatagat attaatgact atcattacat cggtttcgcc attcttcttc 1380 acacaaaaat gaaatatgaa caacttggaa gaatgtatga tatgtggaat gcttcgagta 1440 tttcgatgtg gtttaccgcg ctgactcgtc cgtttcgcgt gtttttctcc aacgctgttc 1500 aagcactatt cccgactttg agaccccgcg aggaaaaaga attcctgatc aagctctcca 1560 ccttcgtgac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catccgctgc atgtgttgcc acgcaggctg ttaccgatgg gaagattttg gctgcgcaga 1680 aagccgagaa gcttgctgaa aggcttgcac aacccgtgag agaggtatcg gacagtcctg 1740 agacgtcatc tcaaacgtct gatgatacag ctgatgtttg tggagaggag cgagaggtct 1800 cggaactcga ctccctatca gctcaaacgc gttcccccat cactagaatt gctgaaagag 1860 ctactgctat gttagagtat gctgcttatg agaaacaatt acacgacacc acagtgtcta 1920 atttaaaacg tatttggaat tcggcgggcg gtgatgacaa aagaaactcc ctcgagggta 1980 atctgaactt tgtttttgat acgtattttt ccgttgatcc tatggtgaac attcgtttcc 2040 ctacgggtcg gtggatgcgt cctgtgcccg agggtattgt ttattctgtc ggttataatg 2100 aacgcggttt aggtccgaag tctgatggag agctttacat tgtcaatggt gaatgcgtga 2160 tttgtaacag tgagtcttta tctactgtca cgcgttctct tcaagctcca accgggacca 2220 ttagtcaagt tgacggagtt gctggttgtg ggaaaaccac ggcaattaaa tccatttttg 2280 agccgtccac tgacatgatc gttaccgcga acaagaagtc cgcccaagat gtacgtatgg 2340 cacttttcaa atcgtcggac tccaaagaag cttgcgcctt tgttcgaaca gccgattctg 2400 tcctacttaa tgaatgtccg actgttagta gggttttggt tgatgaggtc gttttgctac 2460 actttggtca attgtgtgcc gtcatgtcta agttgaaggc cgtgcgagct atatgttttg 2520 gggattcgga gcagattgct ttttcctcgc gtgatgcctc ctttgacatg cgtttctcta 2580 agatcattcc tgatgaaact agtgatgctg acaccacatt ccgtagccca caagatgttg 2640 taccgcttgt gcgtttaatg gctacgaagg cccttccgag aggaacccat tcaaaataca 2700 cgaaatgggt ttctcaatct acagtgagaa gatctgttac atctcgtgcc atcgctagtg 2760 tgacaatggt tgacttggat tcttccaggt tctatataac catgacccaa gctgataagg 2820 cctcactgat ttcaagggcg aaagagatga atctaccaaa gactttctgg aatgaaagga 2880 ttaaaaccgt gcatgagtct caaggtattt ccgaagacca cgttactttg gtaagattaa 2940 agagtacaaa atgtgacctg tttaaacagt tctcttactg tctcgttgca atgactagac 3000 acaaggtcac attccgctac gagcactgtg gtgtgttgaa cggcgattta atcgccgaat 3060 gtgttgctcg tgcttagcgg tctccctcct tcgggagacc gctcctccct cctgcggcgg 3120 gagctgagtt ggcagtattg ctctaaactg tctgaagtca ctaaacacag tgtgtcactg 3180 tacacattgt ggtgaacggg ttgtccatcc agcttacggc taaaatggtc agtcgtggag 3240 aaatccacgc cagtagactt acaagtctct gaggcaccct tgaaaccatc tcctaggttt 3300 cttcggaagg gcttcggtcc gtgtacttct agcacaatgt gctagtttag ggtacgggtg 3360 tccccacttt cgtggggctc cacaaggaga cca 3393 //