ID   AB179983; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179983;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: SD3J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 4aa69d99971067a6a6d81bc5c3a3cc20.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SD3J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6D6"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6D6"
FT                   /protein_id="BAD20397.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPINLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 496 A; 319 C; 358 G; 354 T; 0 other;
     tctgacggga tttctcgcca ttttatgagt gaatatggcg cactcgaggc agttcaccat        60
     caaaacacca acgacatgag caagttctta aagctaaagg gcaaatggaa caaaacgctt       120
     atcacgcgtg atgtgttagt gatttgtgga gttcttggag gtggaatatg gatgatcatc       180
     caacacctgc gtatgaagat ctccgaaccc gtgacccacg aggcaaaagg caagaggcag       240
     agacagaagt tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtttacgga       300
     gaagacgacg tcattgaaca cttctttgga gatgcctaca caaagaaggg aaagagtaaa       360
     ggcagaactc gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggattcgat       420
     cctgaagact tctctgcagt tagattcgta gatccactca caggggcaac aatagatgaa       480
     agtccaatca tggacatagc ccttgtgcag gaacatttcg gaaaaatacg gatggatcta       540
     cttggagaag acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac       600
     tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca cataccacta       660
     aaggtatgtg accttcatgc aacaattgct ggtttcccgg aacgagaaca cgaactgagg       720
     caaactggaa aagctcagcc tattaactta agtgaagtac ctaaagctaa cactgagcta       780
     attccagttg accatgaaag tagctccatg tttagagggt tgcgcgacta caacccaata       840
     tccaataaca tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg       900
     gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa taatggtgaa       960
     ctcgtgataa agtcaagaca tggtgagttt gtgattaaga acacgactca gctacacttg      1020
     ctaccgattc cggacagaga ccttttgcta atccgactac ctaaagacat tccacccttc      1080
     ccgcaaaaac tgggatttag acaacctgag aggggtgaga ggatctgtat ggtaggttct      1140
     aactttcaaa caaagagcat tacgagtgtg gtttctgaaa ctagcacaat aatgccagtg      1200
     gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg tggaagcccg      1260
     atggtgagca caaaggatgg aaaaatactt gggctacaca gcctagcaaa tttccaaaat      1320
     tccatcaact actttgctgc cttcccagat gattttgccg agaagtacct ctacactatt      1380
     gaggcacacg agtgggtcaa gcattggaag tataacacca gtgcaattag ttggggctcc      1440
     ctaaatatac aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac      1500
     cttgacagca cagcggttta tgcgcaa                                          1527
//