ID   AB179981; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179981;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 9494848002314419387a8ae7d261ccf0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ST19J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6D8"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6D8"
FT                   /protein_id="BAD20395.1"
FT                   /translation="TDGISRHFMSGFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDSKMGREVYGEDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNKIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDNFAEKYLH
FT                   TIEAHEWVKHWKYNTNAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 490 A; 338 C; 358 G; 341 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gggtttggag ctcttgaggc agttcaccat        60
     caaaacacca gcgacatgag taaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtgctggt gctttgtgga gtccttggag gtggattgtg gatggttatt       180
     cagcatctgc ggtcaaagat ttccgaacct gtaacccacg aagcgaaagg caagaggcaa       240
     agacagaaac taaagtttcg caatgcccga gacagcaaga tgggcagaga agtgtacgga       300
     gaggatgata ccatagaaca tttcttcggt gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacac gtggtctcgg acacaagaat agaaagttca tcaacatgta cgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagccac gttggacgac       480
     aacccattca cagacatcgc tcttgtgcaa gagcactttg gtaacataag aatggactta       540
     ctcggggagg atgagctgga ctcaaataag atacgcatga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccgca catacctctc       660
     aaggtgtgtg atcttcatgc aaccattgct ggattcccag agcgagagaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata gacgaagtac caagagctaa taatgaactc       780
     gtcccagtgg accatgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tctgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcataataa aatcacgaca tggcgagttt gtgattaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac cgaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt ggattacaca gtctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat aattttgccg agaagtatct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tacaacacta atgccatcag ttggggctct      1440
     ttgaatatac aagcatcgca accgtcaggc ttgtttaaag taagcaagct aatctcagac      1500
     ctcgacagca cagcagtcta cgcacaa                                          1527
//