ID   AB179980; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179980;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; df3a4908f2ca5803ba286d5f5ed9a8c3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL5"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6D9"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6D9"
FT                   /protein_id="BAD20394.1"
FT                   /translation="SDGISRHFMSEYGALETVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMTKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 494 A; 314 C; 362 G; 357 T; 0 other;
     tctgacggga tttctcggca ttttatgagt gaatatggag cactcgagac agttcaccat        60
     caaaacacca acgacatgag caagttttta aagctgaagg gcaaatggaa caaaacgctt       120
     atcacgcgtg atgtgttggt tatttgtgga gttcttggag gtggaatatg gatgatcatc       180
     caacacctgc gtatgaagat ctccgaaccc gtgacccacg aggcgaaagg caagaggcag       240
     agacagaagt tgaagtttcg caatgcccgc gataacaaaa tgggtagaga agtgtacgga       300
     gatgatgata ccatagaaca cttctttgga gatgcctaca caaagaaggg aaagagtaaa       360
     ggtagaactc gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggattcgat       420
     cctgaagact tctctgcagt tagattcgta gatccactca caggggcaac gatagatgaa       480
     agtccaatca tggacatagc ccttgtgcag gaacatttcg gaaaaatacg gatggattta       540
     cttggagaag acgaactgga acccgatgag ttgcgaatga ctaagacgat tcaggcttac       600
     tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca cataccacta       660
     aaggtatgtg atcttcatgc aacaattgct ggtttcccgg aacgagaaca cgaactgagg       720
     caaactggaa aagctcagcc tatggactta agtgaagtac ctaaagctaa cactgagcta       780
     attccagttg accatgaaag tagctccatg tttagagggt tgcgcgacta caacccaata       840
     tccaataaca tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg       900
     gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa taatggtgaa       960
     ctcgtgataa agtcaagaca tggtgagttt gtgattaaga acacgactca gttacacttg      1020
     ctaccgattc cggacaggga ccttctgcta atccgactac ctaaagacat tccacccttc      1080
     ccgcaaaaac tgggatttag acaacctgag aagggtgaga ggatctgtat ggtaggctcc      1140
     aactttcaaa caaagagcat tacgagtgta gtttctgaga ctagcacaat aatgccagtg      1200
     gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg tggaagcccg      1260
     atggtgagca cgaaggatgg aaaaatactt gggctacaca gcctagcaaa tttccaaaac      1320
     tccatcaact actttgctgc cttcccagat gattttgctg agaagtacct ctacactatt      1380
     gaggcacacg agtgggtcaa gcattggaag tataacacca gtgcaattag ttggggctcc      1440
     ctaaatatac aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac      1500
     cttgacagca cagcggttta tgcgcaa                                          1527
//