ID   AB179978; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179978;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; bbb9038cba02cc38e47a7482e7235dce.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL3"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6E1"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6E1"
FT                   /protein_id="BAD20392.1"
FT                   /translation="TDGISQHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLGEDELDSNGIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFSEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 482 A; 341 C; 362 G; 342 T; 0 other;
     accgatggaa tatctcagca tttcatgagt gagtttggag ctcttgaggc agtccaccat        60
     caaaacacca gtgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtgttggt gctttgtgga gttcttggag gtggattgtg gatggttatt       180
     cagcacctgc ggtcaaagat ctccgaaccc gtaacccacg aagcgaaagg taagaggcaa       240
     agacagaaac ttaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gatgacgata ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggcaggacac gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcaac gttggatgac       480
     aacccgctca cagacatcac ccttgtgcaa gagcactttg gtaacataag aatggacttg       540
     ctcggggagg atgagctgga ttcaaatgga atacgtgtga ataagacgat tcaggcctac       600
     tacatgaaca ataaaacagg caaggccttg aaggtggatt tgacaccaca catacctctt       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaca cgaattgagg       720
     cagactggga aggctcagcc cattaacata gacgaagtgc caagagccaa taatgaactc       780
     gtcccagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggctttg gaccactcat attaacgaac cgacacctct ttgaacggaa taacggtgaa       960
     ctcgtaataa aatcacgaca cggtgagttc gtgattaaaa acacaactca gctacacctg      1020
     ttaccgattc cagacagaga tcttctgcta atccggctac caaaggacat cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aagggtgaac ggatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagatgg gaaaatactc gggttacata gcctagcgaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gatttttccg agaagtatct tcacaccatt      1380
     gaagcacatg aatgggtcaa gcattggaag tataacacta gcgccatcag ttggggctct      1440
     ttgaatatac aagcatcgca accatcaggc ttgtttaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//