Dbfetch

Dbfetch

ID   AB179975; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179975;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CQS1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 091f983efd29d19e76c45b85e2a6b409.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CQS1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6E4"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6E4"
FT                   /protein_id="BAD20389.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLRLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVVQHLRSKISEPVTHEAKCKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLEEDELDPNAIRSNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPININEVPKANNEPIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 491 A; 347 C; 353 G; 336 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctctcgaggc agttcaccat        60
     cagaatacca gcgacatgag caaattcctc aggctcaagg gcaaatggaa caaaacgcta       120
     attacgcgag atgtgttggt actttgtgga gttcttggag gcggattgtg gatggttgtt       180
     caacacctac ggtcaaagat ttccgaaccc gtaactcacg aagcgaaatg caagaggcaa       240
     aggcagaaac taaagtttcg caacgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gacgatgata ccatcgaaca tttcttcggc gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacgc gcggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcgac attggacgac       480
     aacccgctca cagacatcac ccttgtgcaa gagcactttg gtaatataag aatggacttg       540
     cttgaagaag atgagctgga cccaaacgca atacgttcga ataaaacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata aacgaagtgc caaaagccaa taatgaaccc       780
     atcccagtag accacgagag taactccatg ttcagagggt tgcgtgatta caacccaata       840
     tcaaacaaca tttgtcatct tacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gttggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttt gtgattaaga acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt gggctacaca gcctagcaaa cttccagaac      1320
     tccatcaatt actttgccgc tttcccagat gattttgccg agaagtatct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataacacta gtgccatcag ttggggctct      1440
     ttgaatatac aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//